BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0336.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3040 [U] COG0690 Preprotein translocase subunit SecE Rso Rals...   133   1e-31
VC0322 [U] COG0690 Preprotein translocase subunit SecE Vch Vibri...    75   3e-14
STM4147 [U] COG0690 Preprotein translocase subunit SecE Sty Salm...    72   4e-13
YPO3753 [U] COG0690 Preprotein translocase subunit SecE Ype Yers...    67   1e-11
secE [U] COG0690 Preprotein translocase subunit SecE Eco Escheri...    65   3e-11

>RSc3040 [U] COG0690 Preprotein translocase subunit SecE Rso Ralstonia
           solanacearum
          Length = 126

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 96/126 (76%)

Query: 1   MSNQPVQTVNTSSDKLKVALAIVAVIAGVVGFFVLSGQSTPVRALALVAGLLVAVGFAWT 60
           M+N  V+TVN SS K  + +A + V+AGV+GF++L+ Q   VRA +L+ GL +  G A  
Sbjct: 1   MANPNVETVNPSSGKWLLVVAFLLVVAGVIGFYLLAQQPGYVRAASLIGGLALGAGVALV 60

Query: 61  SSQGRGFVGFAKESVRETKKVVWPTRKEATQITAIVFAFVLIMAIFLWGTDKLLEFLLYD 120
           S+ G+GF+ FA+ES RE +KVVWPTRKEA Q+T +VFAFV+IMA+FLW  DKL+E++++ 
Sbjct: 61  SAPGQGFLEFARESYREVRKVVWPTRKEAGQMTGLVFAFVVIMAVFLWSADKLIEWVIFS 120

Query: 121 VILGWK 126
           ++LGWK
Sbjct: 121 LVLGWK 126


>VC0322 [U] COG0690 Preprotein translocase subunit SecE Vch Vibrio cholerae
          Length = 131

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 66/113 (58%)

Query: 2   SNQPVQTVNTSSDKLKVALAIVAVIAGVVGFFVLSGQSTPVRALALVAGLLVAVGFAWTS 61
           +N      + ++D LK     V ++A VVG ++    S   RA  ++  +  A+G A T+
Sbjct: 9   NNAEAPDSSNAADTLKWVATFVLLVAAVVGNYLYGELSVVARAAGVIVLIAAALGVAATT 68

Query: 62  SQGRGFVGFAKESVRETKKVVWPTRKEATQITAIVFAFVLIMAIFLWGTDKLL 114
           ++G+  + FA+ES  E +KVVWPTR+E  Q T IV A  ++MA+ LWG D ++
Sbjct: 69  TKGKEAIVFARESRMEVRKVVWPTRQETMQTTLIVLAVSIVMALALWGIDGIM 121


>STM4147 [U] COG0690 Preprotein translocase subunit SecE Sty Salmonella
           typhimurium LT2
          Length = 127

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query: 2   SNQPVQTVNTSSDKLKVALAIVAVIAGVVGFFVLSGQSTPVRALALVAGLLVAVGFAWTS 61
           +N   Q      + +K  +  + +I  +VG ++      P+RALA+V  +  A G A  +
Sbjct: 3   ANTEAQGSGRGLEAMKWIVVAILLIVAIVGNYLYRDMMLPLRALAVVILIAAAGGVALLT 62

Query: 62  SQGRGFVGFAKESVRETKKVVWPTRKEATQITAIVFAFVLIMAIFLWGTDKLL 114
           ++G+  V FA+E+  E +KV+WPTR+E    T IV A   +M++ LWG D +L
Sbjct: 63  TKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGIL 115


>YPO3753 [U] COG0690 Preprotein translocase subunit SecE Ype Yersinia pestis
          Length = 127

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 31  GFFVLSGQSTPVRALALVAGLLVAVGFAWTSSQGRGFVGFAKESVRETKKVVWPTRKEAT 90
           G +     S P+RALA+V  + VA   A  +++G+  V FA+E+  E +KV+WPTR+E  
Sbjct: 32  GNYYYREYSLPLRALAVVVIIAVAGAVALMTAKGKATVAFAREARTEVRKVIWPTRQETL 91

Query: 91  QITAIVFAFVLIMAIFLWGTDKLL 114
             T IV A   +M++ LWG D +L
Sbjct: 92  HTTLIVAAVTAVMSLILWGLDGIL 115


>secE [U] COG0690 Preprotein translocase subunit SecE Eco Escherichia
           coli K12
          Length = 127

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 41  PVRALALVAGLLVAVGFAWTSSQGRGFVGFAKESVRETKKVVWPTRKEATQITAIVFAFV 100
           P+RALA+V  +  A G A  +++G+  V FA+E+  E +KV+WPTR+E    T IV A  
Sbjct: 42  PLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVT 101

Query: 101 LIMAIFLWGTDKLL 114
            +M++ LWG D +L
Sbjct: 102 AVMSLILWGLDGIL 115