BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0331.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae       140   1e-33
NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria menin...   140   1e-33
NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria menin...   140   1e-33
RSc3035 [J] COG0222 Ribosomal protein L7/L12 Rso Ralstonia solan...   134   4e-32
jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter py...   132   2e-31

>VC0327 [J] COG0222 Ribosomal protein L7/L12 Vch Vibrio cholerae
          Length = 121

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 96/125 (76%), Gaps = 4/125 (3%)

Query: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAAEEQTEFT 60
           M+I+ + IL+A+  ++V+++ +L+ A EEKFGVSAAA  V+GPA     AAA EEQTEF 
Sbjct: 1   MSITNEQILDAIAEMSVMQVVELISAMEEKFGVSAAAAVVSGPAA----AAAVEEQTEFN 56

Query: 61  VVLAEIGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEAIPKADAEAAKKKLEEAGA 120
           V+LA  GANKV VIKAVR  TGLGLKEAK LVDGAP  VKEA+ K +AEA KK+LEEAGA
Sbjct: 57  VILAAAGANKVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEEAGA 116

Query: 121 KAEIK 125
             E+K
Sbjct: 117 TVEVK 121


>NMB0131 [J] COG0222 Ribosomal protein L7/L12 Nme Neisseria meningitidis
           MC58
          Length = 123

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 109/125 (87%), Gaps = 2/125 (1%)

Query: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAAEEQTEFT 60
           MAI+K+DILEAVG+LTV+ELNDLVKAFEEKFGVSAAA+AVAGPAG  AGAA AEE+TEF 
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPAG--AGAADAEEKTEFD 58

Query: 61  VVLAEIGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEAIPKADAEAAKKKLEEAGA 120
           VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KE + KA+AE  +K+LEEAGA
Sbjct: 59  VVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGA 118

Query: 121 KAEIK 125
           K EIK
Sbjct: 119 KVEIK 123


>NMA0143 [J] COG0222 Ribosomal protein L7/L12 NmA Neisseria meningitidis
           Z2491
          Length = 123

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 109/125 (87%), Gaps = 2/125 (1%)

Query: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAAEEQTEFT 60
           MAI+K+DILEAVG+LTV+ELNDLVKAFEEKFGVSAAA+AVAGPAG  AGAA AEE+TEF 
Sbjct: 1   MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPAG--AGAADAEEKTEFD 58

Query: 61  VVLAEIGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEAIPKADAEAAKKKLEEAGA 120
           VVLA  G  KVGVIK VR ITGLGLKEAKD+VDGAPK +KE + KA+AE  +K+LEEAGA
Sbjct: 59  VVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGA 118

Query: 121 KAEIK 125
           K EIK
Sbjct: 119 KVEIK 123


>RSc3035 [J] COG0222 Ribosomal protein L7/L12 Rso Ralstonia solanacearum
          Length = 124

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 112/125 (89%), Gaps = 1/125 (0%)

Query: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAAEEQTEFT 60
           MAI+KDDILEAV  ++V+ELNDLVKAFE+KFGVSAAA+AVAGPAGG A A AAEE+TEF 
Sbjct: 1   MAITKDDILEAVSAMSVMELNDLVKAFEDKFGVSAAAVAVAGPAGGAA-APAAEEKTEFD 59

Query: 61  VVLAEIGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEAIPKADAEAAKKKLEEAGA 120
           V+L   GANKVGVIKAVREITGLGLKEAKDLVDGAPK VKEA+PKADA+AA KKL EAGA
Sbjct: 60  VILKGAGANKVGVIKAVREITGLGLKEAKDLVDGAPKTVKEAMPKADADAAAKKLIEAGA 119

Query: 121 KAEIK 125
           + E+K
Sbjct: 120 EVEVK 124


>jhp1122 [J] COG0222 Ribosomal protein L7/L12 jHp Helicobacter pylori J99
          Length = 125

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 95/125 (76%)

Query: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAAEEQTEFT 60
           MAISK+++LE +G+L+VLEL++LVK FEEKFGVSA    VAG A  G  AA +EE+TEF 
Sbjct: 1   MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTEFN 60

Query: 61  VVLAEIGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEAIPKADAEAAKKKLEEAGA 120
           V+LA+ GA K+ VIK VREITGLGLKEAKD  +  P  +KE + K +AE  KKKLEE GA
Sbjct: 61  VILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGA 120

Query: 121 KAEIK 125
           K E+K
Sbjct: 121 KVEVK 125