BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0318.p         (44 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3019 [J] COG0087 Ribosomal protein L3 Rso Ralstonia solanacearum    64   1e-10
PM1415 [J] COG0087 Ribosomal protein L3 Pmu Pasteurella multocida      60   8e-10
NMB0142 [J] COG0087 Ribosomal protein L3 Nme Neisseria meningiti...    60   2e-09
NMA0129 [J] COG0087 Ribosomal protein L3 NmA Neisseria meningiti...    60   2e-09
VC2596 [J] COG0087 Ribosomal protein L3 Vch Vibrio cholerae            59   3e-09

>RSc3019 [J] COG0087 Ribosomal protein L3 Rso Ralstonia solanacearum
          Length = 220

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 35/39 (89%)

Query: 1   VQNLEIARIDAERQLLLVKGAVPGAKNGQVVVSPAVKVK 39
           VQNL I RIDAER+LLLVKGAVPGAK+G VVVSPAVK K
Sbjct: 175 VQNLVIVRIDAERKLLLVKGAVPGAKSGFVVVSPAVKAK 213


>PM1415 [J] COG0087 Ribosomal protein L3 Pmu Pasteurella multocida
          Length = 209

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 1   VQNLEIARIDAERQLLLVKGAVPGAKNGQVVVSPAVK 37
           VQ+LE+ R+DAER+LLLVKGAVPGA NG V+V PAVK
Sbjct: 172 VQSLEVVRVDAERKLLLVKGAVPGATNGDVIVKPAVK 208


>NMB0142 [J] COG0087 Ribosomal protein L3 Nme Neisseria meningitidis MC58
          Length = 214

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 33/40 (82%)

Query: 1   VQNLEIARIDAERQLLLVKGAVPGAKNGQVVVSPAVKVKA 40
           VQ LE+ R+DAERQLLLVKGAVPGA N  VVV P+VKV A
Sbjct: 175 VQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA 214


>NMA0129 [J] COG0087 Ribosomal protein L3 NmA Neisseria meningitidis Z2491
          Length = 214

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 33/40 (82%)

Query: 1   VQNLEIARIDAERQLLLVKGAVPGAKNGQVVVSPAVKVKA 40
           VQ LE+ R+DAERQLLLVKGAVPGA N  VVV P+VKV A
Sbjct: 175 VQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA 214


>VC2596 [J] COG0087 Ribosomal protein L3 Vch Vibrio cholerae
          Length = 209

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 1   VQNLEIARIDAERQLLLVKGAVPGAKNGQVVVSPAVK 37
            QNLEI R+DAER LLL+KGAVPGA  G V+V PAVK
Sbjct: 172 TQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAVK 208