BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0309.p         (63 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3011 [J] COG0255 Ribosomal protein L29 Rso Ralstonia solanace...    92   4e-19
NMB0150 [J] COG0255 Ribosomal protein L29 Nme Neisseria meningit...    67   1e-11
NMA0121 [J] COG0255 Ribosomal protein L29 NmA Neisseria meningit...    67   1e-11
HI0785 [J] COG0255 Ribosomal protein L29 Hin Haemophilus influenzae    60   9e-10
PM1407 [J] COG0255 Ribosomal protein L29 Pmu Pasteurella multocida     60   1e-09

>RSc3011 [J] COG0255 Ribosomal protein L29 Rso Ralstonia solanacearum
          Length = 64

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 52/63 (82%)

Query: 1  MKASELRGKDEAALAKELNELLKAHFSLRMQVATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKASELR KD A L +EL+ELLKA F LRMQ ATQQL NT+QLKKVRRDIARV+TV+  K
Sbjct: 1  MKASELRDKDVAGLNQELSELLKAQFGLRMQKATQQLQNTSQLKKVRRDIARVRTVLGEK 60

Query: 61 GQQ 63
          G Q
Sbjct: 61 GSQ 63


>NMB0150 [J] COG0255 Ribosomal protein L29 Nme Neisseria meningitidis MC58
          Length = 63

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query: 1  MKASELRGKDEAALAKELNELLKAHFSLRMQVATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKA+EL+ K    L  +L +LLKA F LRMQ AT QL   ++LK+VRRDIAR+KTV+  K
Sbjct: 1  MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELKRVRRDIARIKTVLTEK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>NMA0121 [J] COG0255 Ribosomal protein L29 NmA Neisseria meningitidis
          Z2491
          Length = 63

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query: 1  MKASELRGKDEAALAKELNELLKAHFSLRMQVATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKA+EL+ K    L  +L +LLKA F LRMQ AT QL   ++LK+VRRDIAR+KTV+  K
Sbjct: 1  MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELKRVRRDIARIKTVLTEK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>HI0785 [J] COG0255 Ribosomal protein L29 Hin Haemophilus influenzae
          Length = 63

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 38/60 (63%)

Query: 1  MKASELRGKDEAALAKELNELLKAHFSLRMQVATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKA +LR K    L  EL  LL   F LRMQ AT QL  T Q K+VRRDIARVKTV+  K
Sbjct: 1  MKAQDLRTKSVEELNAELVNLLGEQFKLRMQTATGQLQQTHQAKQVRRDIARVKTVLTEK 60


>PM1407 [J] COG0255 Ribosomal protein L29 Pmu Pasteurella multocida
          Length = 63

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 38/60 (63%)

Query: 1  MKASELRGKDEAALAKELNELLKAHFSLRMQVATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKA ELR K    L  EL  LL   F LRMQ AT QL  T QLK+VRR IA+VKTV+  K
Sbjct: 1  MKAQELRTKSVEELNAELVNLLGEQFKLRMQAATGQLQQTHQLKQVRRSIAQVKTVLTEK 60