BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0308.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3010 [J] COG0186 Ribosomal protein S17 Rso Ralstonia solanace...   127   7e-30
PA4254 [J] COG0186 Ribosomal protein S17 Pae Pseudomonas aeruginosa   109   1e-24
HI0786 [J] COG0186 Ribosomal protein S17 Hin Haemophilus influenzae   109   2e-24
PM1406 [J] COG0186 Ribosomal protein S17 Pmu Pasteurella multocida    108   3e-24
VC2587 [J] COG0186 Ribosomal protein S17 Vch Vibrio cholerae          107   7e-24

>RSc3010 [J] COG0186 Ribosomal protein S17 Rso Ralstonia solanacearum
          Length = 89

 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 71/83 (85%)

Query: 4  ALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVEIQ 63
          +LKRTL+G+VVS KMDKTVTVL+E  VKHPLYGK +VR+ KYHAHDEANQ K GD VEI 
Sbjct: 7  SLKRTLVGRVVSSKMDKTVTVLVENRVKHPLYGKYVVRSKKYHAHDEANQYKEGDRVEIV 66

Query: 64 EGRPISKTKAWSVTRVVQVAQIV 86
          E RPIS+TKAW V+R+V+ A+++
Sbjct: 67 ESRPISRTKAWVVSRLVEAARVI 89


>PA4254 [J] COG0186 Ribosomal protein S17 Pae Pseudomonas aeruginosa
          Length = 88

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 63/77 (81%)

Query: 7  RTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVEIQEGR 66
          RTL G+VVSDKMDKTVTVLIER VKHP+YGK + R+ K HAHDE+NQ + GD V I+E R
Sbjct: 9  RTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLHAHDESNQCRIGDLVTIRETR 68

Query: 67 PISKTKAWSVTRVVQVA 83
          P++KTKAW++  +V+ A
Sbjct: 69 PLAKTKAWTLVDIVERA 85


>HI0786 [J] COG0186 Ribosomal protein S17 Hin Haemophilus influenzae
          Length = 85

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%)

Query: 7  RTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVEIQEGR 66
          R++ GKVVSDKM+K+  V IER VKHPLYGK I RT K H HDE N+AK GDTVEI+E R
Sbjct: 6  RSVQGKVVSDKMEKSFVVAIERKVKHPLYGKFIRRTTKLHVHDENNEAKVGDTVEIRECR 65

Query: 67 PISKTKAWSVTRVVQVAQI 85
          P+SKTK+W++ RVV+ A I
Sbjct: 66 PLSKTKSWTLVRVVEKAVI 84


>PM1406 [J] COG0186 Ribosomal protein S17 Pmu Pasteurella multocida
          Length = 85

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query: 7  RTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVEIQEGR 66
          R++ GKVVSDKMDK+  V IER VKHPLYGK I RT K H HDE N+AK GD VEI+E R
Sbjct: 6  RSVQGKVVSDKMDKSFVVAIERKVKHPLYGKFIRRTTKLHVHDENNEAKLGDIVEIKECR 65

Query: 67 PISKTKAWSVTRVVQVA 83
          P+SKTK+W++ RVV+ A
Sbjct: 66 PLSKTKSWTLVRVVEKA 82


>VC2587 [J] COG0186 Ribosomal protein S17 Vch Vibrio cholerae
          Length = 84

 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 64/79 (81%)

Query: 7  RTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVEIQEGR 66
          RT +G+VVSDKMDK++ V IER VKHP+YGK + RT K HAHDE N+   GDTVEI+E R
Sbjct: 6  RTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECR 65

Query: 67 PISKTKAWSVTRVVQVAQI 85
          P+SKTK+W++ ++V+ A++
Sbjct: 66 PLSKTKSWTLVKIVEKAKM 84