BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0301.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3003 [J] COG0256 Ribosomal protein L18 Rso Ralstonia solanace...   164   3e-41
NMB0158 [J] COG0256 Ribosomal protein L18 Nme Neisseria meningit...   143   1e-34
NMA0113 [J] COG0256 Ribosomal protein L18 NmA Neisseria meningit...   143   1e-34
YPO0225 [J] COG0256 Ribosomal protein L18 Ype Yersinia pestis         118   4e-27
BU508 [J] COG0256 Ribosomal protein L18 Buc Buchnera sp. APS          117   4e-27

>RSc3003 [J] COG0256 Ribosomal protein L18 Rso Ralstonia solanacearum
          Length = 118

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 97/121 (80%), Gaps = 4/121 (3%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDAN-VLASASTLEAEVRQ 61
           M+K  SRLRRA QTR KIAEL V RLAVHRTN HIYA +   D   VLASAST EAEVR+
Sbjct: 1   MNKNDSRLRRARQTRLKIAELNVARLAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRK 60

Query: 62  QLAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121
           +L   +G GGN AAATLVGKR+AEKA  AG+  VAFDRSGFRYHGRVKALA+AAREAGLK
Sbjct: 61  EL---NGNGGNTAAATLVGKRIAEKAKAAGIEAVAFDRSGFRYHGRVKALADAAREAGLK 117

Query: 122 F 122
           F
Sbjct: 118 F 118


>NMB0158 [J] COG0256 Ribosomal protein L18 Nme Neisseria meningitidis MC58
          Length = 117

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 91/121 (75%), Gaps = 5/121 (4%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDAN-VLASASTLEAEVRQ 61
           MDK  +RLRRA +TRA+IA+LK+ RL V R+N HIYA +I  + + VLA ASTLEAEVR 
Sbjct: 1   MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVR- 59

Query: 62  QLAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121
              G    G N  AA +VGKR+AEKA  AGV +VAFDRSGF+YHGRVKALAEAARE GL 
Sbjct: 60  ---GSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGRVKALAEAARENGLS 116

Query: 122 F 122
           F
Sbjct: 117 F 117


>NMA0113 [J] COG0256 Ribosomal protein L18 NmA Neisseria meningitidis Z2491
          Length = 117

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 91/121 (75%), Gaps = 5/121 (4%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDAN-VLASASTLEAEVRQ 61
           MDK  +RLRRA +TRA+IA+LK+ RL V R+N HIYA +I  + + VLA ASTLEAEVR 
Sbjct: 1   MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVR- 59

Query: 62  QLAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121
              G    G N  AA +VGKR+AEKA  AGV +VAFDRSGF+YHGRVKALAEAARE GL 
Sbjct: 60  ---GSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGRVKALAEAARENGLS 116

Query: 122 F 122
           F
Sbjct: 117 F 117


>YPO0225 [J] COG0256 Ribosomal protein L18 Ype Yersinia pestis
          Length = 117

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 90/121 (74%), Gaps = 5/121 (4%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPD-ANVLASASTLEAEVRQ 61
           MDKK +R+RRAT+ R K+ EL   RL VHRT  HIYA +I P+ + +L +AST+E  + +
Sbjct: 1   MDKKAARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEILVAASTVEKAINE 60

Query: 62  QLAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121
           QL       GN  AA  VGK +AE+AL+ G+T+V+FDRSGF+YHGRV+ALA+AAREAGL+
Sbjct: 61  QLK----YAGNKDAAAAVGKTIAERALEKGITKVSFDRSGFQYHGRVQALADAAREAGLQ 116

Query: 122 F 122
           F
Sbjct: 117 F 117


>BU508 [J] COG0256 Ribosomal protein L18 Buc Buchnera sp. APS
          Length = 122

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 82/120 (68%), Gaps = 5/120 (4%)

Query: 4   DKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGP-DANVLASASTLEAEVRQQ 62
           +K  SR+RR+ +TR KI +L   RL VHRT+ H+YA II   +A VL  ASTLE ++   
Sbjct: 7   NKIISRIRRSMKTRCKIKKLGAIRLVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCS 66

Query: 63  LAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122
           L       GN  AA  +GK +AE+AL  G++ V+FDRSGF+YHGRV+ LAE+ARE GLKF
Sbjct: 67  LKYT----GNKEAAAKIGKIIAERALSKGISHVSFDRSGFKYHGRVQVLAESAREVGLKF 122