BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0300.p         (172 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3002 [J] COG0098 Ribosomal protein S5 Rso Ralstonia solanacearum   296   1e-80
NMB0159 [J] COG0098 Ribosomal protein S5 Nme Neisseria meningiti...   249   3e-66
NMA0112 [J] COG0098 Ribosomal protein S5 NmA Neisseria meningiti...   249   3e-66
rpsE [J] COG0098 Ribosomal protein S5 Eco Escherichia coli K12        217   9e-57
ZrpsE [J] COG0098 Ribosomal protein S5 EcZ Escherichia coli O157...   217   9e-57

>RSc3002 [J] COG0098 Ribosomal protein S5 Rso Ralstonia solanacearum
          Length = 172

 Score =  296 bits (759), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 162/172 (94%)

Query: 1   MAKMQSKMQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAK+Q K+Q D+ DDG+REKMIAVNRVTKVVKGGRI+GFAAL VVGDGDGRIGMGKGK+K
Sbjct: 1   MAKIQPKVQGDERDDGLREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAK 60

Query: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMSPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAM+EARRKM+KV LKNGTLQH V GKHGA+ VLM+PAK+GTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMDEARRKMVKVPLKNGTLQHEVIGKHGAAKVLMAPAKEGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSNGSTNPYNMVRATLDGLAKMNTPAEIAAKRGKSVEDILG 172
           FEVMGVTN+V KS+GSTNPYNMVRATLDGL KM+TPAEIAAKRGKSVE+ILG
Sbjct: 121 FEVMGVTNIVTKSHGSTNPYNMVRATLDGLRKMSTPAEIAAKRGKSVEEILG 172


>NMB0159 [J] COG0098 Ribosomal protein S5 Nme Neisseria meningitidis MC58
          Length = 172

 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 145/167 (86%)

Query: 6   SKMQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSKEVPVA 65
           +K + ++  DG+ EKM+AVNRVTKVVKGGRIM F+AL VVGDGDGRIGMGKGKSKEVPVA
Sbjct: 2   AKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDGDGRIGMGKGKSKEVPVA 61

Query: 66  VQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMSPAKDGTGVIAGGPMRAIFEVMG 125
           VQKAM++ARR MIKV LKNGT+ H V G+HGA+ V M PAK+G+GV AGGPMR +F+ MG
Sbjct: 62  VQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMG 121

Query: 126 VTNVVAKSNGSTNPYNMVRATLDGLAKMNTPAEIAAKRGKSVEDILG 172
           + N+ AK +GSTNPYN+VRATLDGL+K++TPA+IAAKRG +VEDILG
Sbjct: 122 IHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTVEDILG 168


>NMA0112 [J] COG0098 Ribosomal protein S5 NmA Neisseria meningitidis Z2491
          Length = 172

 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 145/167 (86%)

Query: 6   SKMQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSKEVPVA 65
           +K + ++  DG+ EKM+AVNRVTKVVKGGRIM F+AL VVGDGDGRIGMGKGKSKEVPVA
Sbjct: 2   AKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDGDGRIGMGKGKSKEVPVA 61

Query: 66  VQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMSPAKDGTGVIAGGPMRAIFEVMG 125
           VQKAM++ARR MIKV LKNGT+ H V G+HGA+ V M PAK+G+GV AGGPMR +F+ MG
Sbjct: 62  VQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMG 121

Query: 126 VTNVVAKSNGSTNPYNMVRATLDGLAKMNTPAEIAAKRGKSVEDILG 172
           + N+ AK +GSTNPYN+VRATLDGL+K++TPA+IAAKRG +VEDILG
Sbjct: 122 IHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTVEDILG 168


>rpsE [J] COG0098 Ribosomal protein S5 Eco Escherichia coli K12
          Length = 167

 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 127/162 (78%)

Query: 11  DKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSKEVPVAVQKAM 70
           +K    ++EK+IAVNRV+K VKGGRI  F AL VVGDG+GR+G G GK++EVP A+QKAM
Sbjct: 5   EKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 64

Query: 71  EEARRKMIKVTLKNGTLQHTVTGKHGASSVLMSPAKDGTGVIAGGPMRAIFEVMGVTNVV 130
           E+ARR MI V L NGTLQH V G H  S V M PA +GTG+IAGG MRA+ EV GV NV+
Sbjct: 65  EKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVL 124

Query: 131 AKSNGSTNPYNMVRATLDGLAKMNTPAEIAAKRGKSVEDILG 172
           AK+ GSTNP N+VRAT+DGL  MN+P  +AAKRGKSVE+ILG
Sbjct: 125 AKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILG 166


>ZrpsE [J] COG0098 Ribosomal protein S5 EcZ Escherichia coli O157:H7
           EDL933
          Length = 167

 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 127/162 (78%)

Query: 11  DKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSKEVPVAVQKAM 70
           +K    ++EK+IAVNRV+K VKGGRI  F AL VVGDG+GR+G G GK++EVP A+QKAM
Sbjct: 5   EKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 64

Query: 71  EEARRKMIKVTLKNGTLQHTVTGKHGASSVLMSPAKDGTGVIAGGPMRAIFEVMGVTNVV 130
           E+ARR MI V L NGTLQH V G H  S V M PA +GTG+IAGG MRA+ EV GV NV+
Sbjct: 65  EKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVL 124

Query: 131 AKSNGSTNPYNMVRATLDGLAKMNTPAEIAAKRGKSVEDILG 172
           AK+ GSTNP N+VRAT+DGL  MN+P  +AAKRGKSVE+ILG
Sbjct: 125 AKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILG 166