BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0296.p         (72 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2998 [J] COG0361 Translation initiation factor 1 (IF-1) Rso R...   142   1e-34
NMB0163 [J] COG0361 Translation initiation factor 1 (IF-1) Nme N...   131   3e-31
NMA0108 [J] COG0361 Translation initiation factor 1 (IF-1) NmA N...   131   3e-31
HI0548 [J] COG0361 Translation initiation factor 1 (IF-1) Hin Ha...   119   2e-27
infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco Esch...   118   3e-27

>RSc2998 [J] COG0361 Translation initiation factor 1 (IF-1) Rso Ralstonia
          solanacearum
          Length = 72

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60
          MAKDDVIQMQGE+ ENLPNATFRVKLENGHVVLGHISGKMRM+YIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEVQENLPNATFRVKLENGHVVLGHISGKMRMHYIRILPGDKVTVELTPY 60

Query: 61 DLSRARIVFRTK 72
          DLSRARIVFR K
Sbjct: 61 DLSRARIVFRAK 72


>NMB0163 [J] COG0361 Translation initiation factor 1 (IF-1) Nme Neisseria
          meningitidis MC58
          Length = 72

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 67/72 (93%)

Query: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60
          MAK+D IQMQGEILE LPNATF+VKLEN H+VLGHISGKMRM+YIRI PGDKVTVELTPY
Sbjct: 1  MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPY 60

Query: 61 DLSRARIVFRTK 72
          DL+RARIVFR +
Sbjct: 61 DLTRARIVFRAR 72


>NMA0108 [J] COG0361 Translation initiation factor 1 (IF-1) NmA Neisseria
          meningitidis Z2491
          Length = 72

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 67/72 (93%)

Query: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60
          MAK+D IQMQGEILE LPNATF+VKLEN H+VLGHISGKMRM+YIRI PGDKVTVELTPY
Sbjct: 1  MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHYIRISPGDKVTVELTPY 60

Query: 61 DLSRARIVFRTK 72
          DL+RARIVFR +
Sbjct: 61 DLTRARIVFRAR 72


>HI0548 [J] COG0361 Translation initiation factor 1 (IF-1) Hin
          Haemophilus influenzae
          Length = 84

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60
          MAK+D I+MQG ILE LPN  FRV+LENGHVV  HISGKMR NYIRIL GDKVTVE+TPY
Sbjct: 13 MAKEDCIEMQGTILETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEMTPY 72

Query: 61 DLSRARIVFRTK 72
          DLS+ RI+FR++
Sbjct: 73 DLSKGRIIFRSR 84


>infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco
          Escherichia coli K12
          Length = 72

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 62/72 (86%)

Query: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60
          MAK+D I+MQG +LE LPN  FRV+LENGHVV  HISGKMR NYIRIL GDKVTVELTPY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 61 DLSRARIVFRTK 72
          DLS+ RIVFR++
Sbjct: 61 DLSKGRIVFRSR 72