BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0275.p         (167 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum        155   3e-38
NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58   129   2e-30
NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z...   129   2e-30
PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa         104   7e-23
VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae                100   1e-21

>RSc2987 [C] COG2863 Cytochrome c553 Rso Ralstonia solanacearum
          Length = 219

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 30  KKXITDFRT-AGRSNPIMSPLAKALSDEDVKNIAAYLNAQ-APKPGAAKSKDTLELGKQI 87
           +K + DF+    R+ P+MS  A ALSD+D+K+I AY+  Q A KP +AK+KDT+ELG+++
Sbjct: 80  EKQLKDFKAKTERNQPVMSLYAGALSDQDMKDIGAYIAKQPAWKPSSAKNKDTIELGQKL 139

Query: 88  WRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQMTTI 147
           +RGG A + + ACAGCH P GAGIPAQYPR+ GQ  +YT  +L AF+ G+RSNS QM  +
Sbjct: 140 YRGGDAKRGIAACAGCHGPAGAGIPAQYPRIGGQFAEYTEAQLVAFQNGSRSNSVQMHDL 199

Query: 148 ADRLSDKEIKAVADYIAGLK 167
           A R++  +IKAVADYIAGL+
Sbjct: 200 AGRMTALQIKAVADYIAGLR 219



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%)

Query: 84  GKQIWRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQ 143
           G+ ++  G+ +  VPAC  CH P G       P+LAGQH  Y   +L  F+  T  N P 
Sbjct: 37  GETLFNTGVPANGVPACTSCHGPGGNSTANANPKLAGQHAAYIEKQLKDFKAKTERNQPV 96

Query: 144 MTTIADRLSDKEIKAVADYIA 164
           M+  A  LSD+++K +  YIA
Sbjct: 97  MSLYAGALSDQDMKDIGAYIA 117


>NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58
          Length = 207

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 7/141 (4%)

Query: 33  ITDFRTAGRSNPIMSPLAKALSDEDVKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRGGI 92
           I D +    S  +M P+   LSD+D+ N++A+   Q PK G A  K+  ELG +I+RGG+
Sbjct: 68  IRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKENPELGAKIYRGGL 127

Query: 93  ASKNVPACAGCHSPNGAGIPA------QYPRLAGQHQDYTVTELTAFRGGTRSNSPQMTT 146
           + K VPAC  CH P+GAG+P        YPRL GQHQ Y V ++ A++ G R N+  M  
Sbjct: 128 SDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRKNTI-MED 186

Query: 147 IADRLSDKEIKAVADYIAGLK 167
           IA+R+S++++KAVA++I GL+
Sbjct: 187 IANRMSEEDLKAVANFIQGLR 207


>NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z2491
          Length = 207

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 7/141 (4%)

Query: 33  ITDFRTAGRSNPIMSPLAKALSDEDVKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRGGI 92
           I D +    S  +M P+   LSD+D+ N++A+   Q PK G A  K+  ELG +I+RGG+
Sbjct: 68  IRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKENPELGAKIYRGGL 127

Query: 93  ASKNVPACAGCHSPNGAGIPA------QYPRLAGQHQDYTVTELTAFRGGTRSNSPQMTT 146
           + K VPAC  CH P+GAG+P        YPRL GQHQ Y V ++ A++ G R N+  M  
Sbjct: 128 SDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRKNTI-MED 186

Query: 147 IADRLSDKEIKAVADYIAGLK 167
           IA+R+S++++KAVA++I GL+
Sbjct: 187 IANRMSEEDLKAVANFIQGLR 207


>PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa
          Length = 201

 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 31  KXITDFRTAGRSNPIMSPLAKALSDEDVKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRG 90
           K + D +   R+   M+ L   LSD+D+ +IAAY  +Q    G A   + +  G+ ++RG
Sbjct: 62  KQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMA-DPNLVAQGEALFRG 120

Query: 91  GIASKNVPACAGCHSPNGAGI-PAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQ---MTT 146
           G  ++ +PAC GCHSP+G GI  A +P L GQH  Y   +LT FR GTR+N      M +
Sbjct: 121 GKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQS 180

Query: 147 IADRLSDKEIKAVADYIAGL 166
           IA +LS+K+I A++ YI GL
Sbjct: 181 IAAKLSNKDIAAISSYIQGL 200


>VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae
          Length = 223

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 40  GRSNPIMSPLAKALSDEDVKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRGGIASKNVPA 99
           GR +P+MS +A  LSDED+ ++AAY  A  P  G    +D +  GK ++  G AS+ + A
Sbjct: 94  GRYDPVMSAMAMPLSDEDIADLAAYY-ASMPISGNTTPEDVVAQGKVLYTAGDASRGLTA 152

Query: 100 CAGCHSPNGAGIP-AQYPRLAGQHQDYTVTELTAFRGGTRSN--SPQMTTIADRLSDKEI 156
           C  CH P G G   + +P+++GQH DY   +L  FR GTR+N  +  M  +A +L+D +I
Sbjct: 153 CIACHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADI 212

Query: 157 KAVADYIAGL 166
             ++ Y+ GL
Sbjct: 213 DILSKYVGGL 222