BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0255.p (441 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 406 e-113 PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 310 5e-84 Rv0672 [I] COG1960 Acyl-CoA dehydrogenases Mtu Mycobacterium tub... 310 6e-84 MT0701 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tub... 310 6e-84 ZaidB [I] COG1960 Acyl-CoA dehydrogenases EcZ Escherichia coli O... 285 2e-76 >RSc0121 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 557 Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/328 (64%), Positives = 254/328 (77%), Gaps = 5/328 (1%) Query: 9 PMCDAHMVLAR---TDNGLSCFFVPRWRPDGHKNGVLVQRLKDKLGNRSNSSSEVEFEDA 65 PMCDAH+V+AR D LSCFFVPRWR DG KN V +QRLKDKLGN SN+SSEVEF A Sbjct: 227 PMCDAHLVVARMGAEDGPLSCFFVPRWRDDGGKNPVQIQRLKDKLGNCSNASSEVEFRAA 286 Query: 66 YGVMVGDEGRGIPTIIEMANHTRLDCVIGSAGLMRHALVQAIHHARHRSAFGKHLAEQAL 125 G+++G+ GRGIPTI+EMA HTRLDCVIGSA L+RHAL+QA+HHARHR AFG+ LA+Q L Sbjct: 287 QGILIGEAGRGIPTILEMATHTRLDCVIGSAALLRHALMQALHHARHRMAFGRLLADQPL 346 Query: 126 MRNVLADLALESEAATLLMLRLASAFE-APADPLQRAWRRIVTPAAKFWICKRALEFTGE 184 MRNVLADLALES+AATLLM+ L AFE A ADP+ AW+RIVTPAAKFW+CKRA+E TGE Sbjct: 347 MRNVLADLALESQAATLLMMALGDAFERAEADPVAAAWKRIVTPAAKFWVCKRAIEATGE 406 Query: 185 CMEVWGGNGYVETGPMARMYREAPVNSIWEGSGNVMCLDVLRAMEREPDACLLLLDELQQ 244 MEVWGGNGYVE GPMAR+YREAPVNSIWEGSGNVMCLDVLRA+ R PD L L+ ++ + Sbjct: 407 AMEVWGGNGYVEEGPMARLYREAPVNSIWEGSGNVMCLDVLRAIGRVPDDALRLVQDIGE 466 Query: 245 VADGHEVLQAPLHALKQMMTLAPEQREMLARRLVQQLVLAVQGALMLQHAPPAMAEAFVL 304 A GH ++A L AL+ M+ + + +E ARR+ Q L L Q ALML HA AE F+ Sbjct: 467 RARGHRAVRAELAALQAMLHQSGDIQEASARRIAQGLALTAQAALMLAHAHADDAERFIA 526 Query: 305 SRGDAANGRVYGTLPAGTAD-AASLQKS 331 SR +GRV+GTL + A+LQ++ Sbjct: 527 SRFHHQHGRVFGTLEGNAQELGAALQRA 554 >PA3972 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 549 Score = 310 bits (793), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 168/325 (51%), Positives = 208/325 (64%), Gaps = 7/325 (2%) Query: 9 PMCDAHMVLARTDNGLSCFFVPRWRPDGHKNGVLVQRLKDKLGNRSNSSSEVEFEDAYGV 68 PMCDA + LA TD GL+CF +PR RPDG +N +QRLKDKLGN SN+SSE+E+ A Sbjct: 225 PMCDAFLTLAYTDKGLTCFLLPRHRPDGSRNQFYIQRLKDKLGNWSNASSEIEYRGALAW 284 Query: 69 MVGDEGRGIPTIIEMANHTRLDCVIGSAGLMRHALVQAIHHARHRSAFGKHLAEQALMRN 128 MVG+EGRG+PTIIEM TR DC+IGS+ LMR AL QA HH +R G+ LAEQ LM+N Sbjct: 285 MVGEEGRGVPTIIEMVAMTRFDCMIGSSALMRQALTQAAHHCAYRKVGGRVLAEQPLMQN 344 Query: 129 VLADLALESEAATLLMLRLASAFEAPADPLQRAWRRIVTPAAKFWICKRALEFTGECMEV 188 VLADLALESEAA L LR+ A + D + + R+VT K+WICKRA E E Sbjct: 345 VLADLALESEAALALTLRMGHALDRAHDEQEEKFARLVTAVGKYWICKRAPAMINEASEC 404 Query: 189 WGGNGYVETGPMARMYREAPVNSIWEGSGNVMCLDVLRAMEREPDACLLLLDELQQVADG 248 GG GYVE + R+YREAPVNSIWEGSGNV CLDVLRA+ +EP L EL DG Sbjct: 405 MGGAGYVEETILPRLYREAPVNSIWEGSGNVQCLDVLRALSKEPGVLDALFAEL---GDG 461 Query: 249 HEVLQAPLHALKQMMTLAPEQR-EMLARRLVQQLVLAVQGALMLQHAPPAMAEAFVLSR- 306 H + H A + AR+L + + +A+Q L+L+ A+++AF+ SR Sbjct: 462 HGDARLAAHIGNLKAAFADTADIQYRARQLTEDVAIALQAKLLLEAGNSAVSDAFIGSRL 521 Query: 307 GDAANGRVYGTLPAGTADAASLQKS 331 GD GRVYGTLP G A L ++ Sbjct: 522 GDG--GRVYGTLPRGVEVEALLARA 544 >Rv0672 [I] COG1960 Acyl-CoA dehydrogenases Mtu Mycobacterium tuberculosis H37Rv Length = 542 Score = 310 bits (793), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/337 (48%), Positives = 222/337 (65%), Gaps = 17/337 (5%) Query: 6 TDXPMCDAHMVLARTDNGLSCFFVPRWRPDGHKNGVLVQRLKDKLGNRSNSSSEVEFEDA 65 T PMCD +VLA+ +GLSCF +PR PDG +N + +QRLKDKLGN +N+SSEVE++ A Sbjct: 212 TSAPMCDIFLVLAQAPDGLSCFLLPRVLPDGTRNRMFLQRLKDKLGNHANASSEVEYDGA 271 Query: 66 YGVMVGDEGRGIPTIIEMANHTRLDCVIGSAGLMRHALVQAIHHARHRSAFGKHLAEQAL 125 +VG+EGRG+PTIIEM N TRLDC +GSA MR L +A+HHA+HR AFG +L +Q L Sbjct: 272 VAWLVGEEGRGVPTIIEMVNLTRLDCALGSATSMRTGLTRAVHHAQHRKAFGAYLIDQPL 331 Query: 126 MRNVLADLALESEAATLLMLRLASAFEAP--ADPLQRAWRRIVTPAAKFWICKRALEFTG 183 MRNVLADLA+E+EAAT++ +R+A A + + + RRI AAK+W+CKR+ Sbjct: 332 MRNVLADLAVEAEAATIVAMRMAGATDNAVRGNETEALLRRIGLAAAKYWVCKRSTAHAA 391 Query: 184 ECMEVWGGNGYVETGPMARMYREAPVNSIWEGSGNVMCLDVLRAMEREPDACLLLLDELQ 243 E +E GGNGYVE M R+YREAP+ IWEGSGNV LD LRAM P +L DEL Sbjct: 392 EALECLGGNGYVEDSGMPRLYREAPLMGIWEGSGNVSALDTLRAMATRPACVEVLFDELA 451 Query: 244 QVA------DGH-EVLQAPLHALKQMMTLAPEQREMLARRLVQQLVLAVQGALMLQHAPP 296 + A DGH E L+ L L + AR++ + + LA+QG+L+++H P Sbjct: 452 RSAGQDPRLDGHVERLRPQLGDLDTI--------GYRARKIAEDICLALQGSLLVRHGHP 503 Query: 297 AMAEAFVLSRGDAANGRVYGTLPAGTADAASLQKSIL 333 A+AEAF+ +R G YGT+PAG A L+++++ Sbjct: 504 AVAEAFLATRLGGQWGGAYGTMPAGLDLAPILERALV 540 >MT0701 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tuberculosis CDC1551 Length = 542 Score = 310 bits (793), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/337 (48%), Positives = 222/337 (65%), Gaps = 17/337 (5%) Query: 6 TDXPMCDAHMVLARTDNGLSCFFVPRWRPDGHKNGVLVQRLKDKLGNRSNSSSEVEFEDA 65 T PMCD +VLA+ +GLSCF +PR PDG +N + +QRLKDKLGN +N+SSEVE++ A Sbjct: 212 TSAPMCDIFLVLAQAPDGLSCFLLPRVLPDGTRNRMFLQRLKDKLGNHANASSEVEYDGA 271 Query: 66 YGVMVGDEGRGIPTIIEMANHTRLDCVIGSAGLMRHALVQAIHHARHRSAFGKHLAEQAL 125 +VG+EGRG+PTIIEM N TRLDC +GSA MR L +A+HHA+HR AFG +L +Q L Sbjct: 272 VAWLVGEEGRGVPTIIEMVNLTRLDCALGSATSMRTGLTRAVHHAQHRKAFGAYLIDQPL 331 Query: 126 MRNVLADLALESEAATLLMLRLASAFEAP--ADPLQRAWRRIVTPAAKFWICKRALEFTG 183 MRNVLADLA+E+EAAT++ +R+A A + + + RRI AAK+W+CKR+ Sbjct: 332 MRNVLADLAVEAEAATIVAMRMAGATDNAVRGNETEALLRRIGLAAAKYWVCKRSTAHAA 391 Query: 184 ECMEVWGGNGYVETGPMARMYREAPVNSIWEGSGNVMCLDVLRAMEREPDACLLLLDELQ 243 E +E GGNGYVE M R+YREAP+ IWEGSGNV LD LRAM P +L DEL Sbjct: 392 EALECLGGNGYVEDSGMPRLYREAPLMGIWEGSGNVSALDTLRAMATRPACVEVLFDELA 451 Query: 244 QVA------DGH-EVLQAPLHALKQMMTLAPEQREMLARRLVQQLVLAVQGALMLQHAPP 296 + A DGH E L+ L L + AR++ + + LA+QG+L+++H P Sbjct: 452 RSAGQDPRLDGHVERLRPQLGDLDTI--------GYRARKIAEDICLALQGSLLVRHGHP 503 Query: 297 AMAEAFVLSRGDAANGRVYGTLPAGTADAASLQKSIL 333 A+AEAF+ +R G YGT+PAG A L+++++ Sbjct: 504 AVAEAFLATRLGGQWGGAYGTMPAGLDLAPILERALV 540 >ZaidB [I] COG1960 Acyl-CoA dehydrogenases EcZ Escherichia coli O157:H7 EDL933 Length = 546 Score = 285 bits (728), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 145/294 (49%), Positives = 189/294 (64%), Gaps = 3/294 (1%) Query: 9 PMCDAHMVLARTDNGLSCFFVPRWRPDGHKNGVLVQRLKDKLGNRSNSSSEVEFEDAYGV 68 P DAH+VLA+T GLSCFFVPR+ PDG +N + ++RLKDKLGNRSN+S EVEF+DA G Sbjct: 225 PQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGW 284 Query: 69 MVGDEGRGIPTIIEMANHTRLDCVIGSAGLMRHALVQAIHHARHRSAFGKHLAEQALMRN 128 ++G EG GI I++M TR DC +GS +MR A AI+HA R FG L +Q LMR+ Sbjct: 285 LLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRH 344 Query: 129 VLADLALESEAATLLMLRLASAFEAPADPLQRAWRRIVTPAAKFWICKRALEFTGECMEV 188 VL+ +AL+ E T L+ RLA A++ AD + W R+ TPAAKF ICKR + F E MEV Sbjct: 345 VLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEV 404 Query: 189 WGGNGYVETGPMARMYREAPVNSIWEGSGNVMCLDVLRAMEREPDACLLLLDELQQVADG 248 GG GY E + R+YRE PVNSIWEGSGN+MCLDVLR + ++ LL + +V Sbjct: 405 LGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQ 464 Query: 249 HEVLQAPLHALKQMMTLAPEQREMLARRLVQQLVLAVQGALMLQHAPPAMAEAF 302 + L+Q + E+ L R + QL L GA ML++A P MA+A+ Sbjct: 465 DRYFDCAVRRLQQQLRKPAEE---LGREITHQLFLLGCGAQMLKYASPPMAQAW 515