BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0253.p         (321 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0046 [T] COG1734 DnaK suppressor protein Rso Ralstonia solana...   241   1e-63
NMA0213 [T] COG1734 DnaK suppressor protein NmA Neisseria mening...   166   5e-41
NMB0056 [T] COG1734 DnaK suppressor protein Nme Neisseria mening...   166   6e-41
SMc00469 [T] COG1734 DnaK suppressor protein Sme Sinorhizobium m...   132   1e-30
AGc2513 [T] COG1734 DnaK suppressor protein Atu Agrobacterium tu...   131   2e-30

>RSc0046 [T] COG1734 DnaK suppressor protein Rso Ralstonia solanacearum
          Length = 139

 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 125/134 (93%)

Query: 188 LLTEEQILKMGEKDYMNEAQLAFFKARLQQLERDLLKNAGETTEHLRETVLVPDPADRAT 247
           LLTE +ILKMG+KDYMNEAQLAFFK RL++L  D+LKNAG+TTEHLRETV+VPDPADRAT
Sbjct: 6   LLTEAEILKMGDKDYMNEAQLAFFKDRLEKLRDDILKNAGQTTEHLRETVIVPDPADRAT 65

Query: 248 IEEEHALELRTRDRERKLLKKVQQSIVSIDSGEYGWCEETGEPIGIPRLLARPTATLSLE 307
           IEEEHALELRTRDRERKLLKKV+QSI  ID G YG+C+ETGEPIGIPRLLARPTATL+LE
Sbjct: 66  IEEEHALELRTRDRERKLLKKVEQSIARIDEGNYGYCDETGEPIGIPRLLARPTATLTLE 125

Query: 308 AQQRRELKQKLYGD 321
           AQ+RRE +QKL+GD
Sbjct: 126 AQERREKRQKLFGD 139


>NMA0213 [T] COG1734 DnaK suppressor protein NmA Neisseria meningitidis
           Z2491
          Length = 138

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 104/135 (77%), Gaps = 2/135 (1%)

Query: 189 LTEEQILKMG--EKDYMNEAQLAFFKARLQQLERDLLKNAGETTEHLRETVLVPDPADRA 246
           LTE+ IL     E DYMN+  LAFF+  L +++ +L++NA  TT HL+E    PDPADRA
Sbjct: 4   LTEQDILNWNGPEDDYMNDEHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRA 63

Query: 247 TIEEEHALELRTRDRERKLLKKVQQSIVSIDSGEYGWCEETGEPIGIPRLLARPTATLSL 306
           T EEE+ALELRTRDRERKLL K+Q +I +ID G+YG+C +TGEPIG+ RLLARPTATLS+
Sbjct: 64  TQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSV 123

Query: 307 EAQQRRELKQKLYGD 321
           E+Q+RRE  +K + D
Sbjct: 124 ESQERRERMKKQFAD 138


>NMB0056 [T] COG1734 DnaK suppressor protein Nme Neisseria meningitidis MC58
          Length = 138

 Score =  166 bits (420), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 104/135 (77%), Gaps = 2/135 (1%)

Query: 189 LTEEQILKMG--EKDYMNEAQLAFFKARLQQLERDLLKNAGETTEHLRETVLVPDPADRA 246
           LTE+ IL     E DYMN+  LAFF+  L +++ +L++NA  TT HL+E    PDPADRA
Sbjct: 4   LTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRA 63

Query: 247 TIEEEHALELRTRDRERKLLKKVQQSIVSIDSGEYGWCEETGEPIGIPRLLARPTATLSL 306
           T EEE+ALELRTRDRERKLL K+Q +I +ID G+YG+C +TGEPIG+ RLLARPTATLS+
Sbjct: 64  TQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSV 123

Query: 307 EAQQRRELKQKLYGD 321
           E+Q+RRE  +K + D
Sbjct: 124 ESQERRERMKKQFAD 138


>SMc00469 [T] COG1734 DnaK suppressor protein Sme Sinorhizobium meliloti
          Length = 139

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 199 EKDYMNEAQLAFFKARLQQLERDLLKNAGETTEHL-RETVLVPDPADRATIEEEHALELR 257
           ++D+MN    A+F+A+L     D+L+ A ET +HL  E+   PD ADRA+ E + A+ELR
Sbjct: 15  DEDFMNANHRAYFRAKLNAWRNDILREARETLDHLAEESANHPDLADRASSETDRAIELR 74

Query: 258 TRDRERKLLKKVQQSIVSIDSGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQK 317
            RDR+RKL+ K+  ++  +D G YG+CEETGEPIG+ RL ARP ATLS+EAQ+R E ++K
Sbjct: 75  ARDRQRKLIAKIDAALQRLDEGTYGYCEETGEPIGLKRLDARPIATLSIEAQERHERREK 134

Query: 318 LYGD 321
           +Y D
Sbjct: 135 VYRD 138


>AGc2513 [T] COG1734 DnaK suppressor protein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 148

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 91/127 (71%), Gaps = 2/127 (1%)

Query: 197 MGEKD-YMNEAQLAFFKARLQQLERDLLKNAGETTEHL-RETVLVPDPADRATIEEEHAL 254
           + E D +MN +Q A+F+A+L   + D+L+ A ET  HL  E+   PD ADRA+ E + A+
Sbjct: 21  LSEDDEFMNASQRAYFRAKLIAWKNDILREARETLGHLAEESANHPDLADRASSETDRAI 80

Query: 255 ELRTRDRERKLLKKVQQSIVSIDSGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRREL 314
           ELR RDR+RKL+ K+  ++  ID G YG+CEETGEPIG+ RL ARP ATLS+EAQ+R E 
Sbjct: 81  ELRARDRQRKLISKIDAALQRIDDGTYGYCEETGEPIGLKRLDARPIATLSIEAQERHER 140

Query: 315 KQKLYGD 321
           ++K+Y D
Sbjct: 141 REKVYRD 147