BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0241.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 197 2e-50 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 112 9e-25 RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 110 4e-24 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 108 7e-24 mlr3988 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 101 1e-21 >PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 291 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 151/219 (68%), Gaps = 3/219 (1%) Query: 5 EKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTST 64 EKME +A +L R+ +G+D RL G VR++ TD++A ++PA+ +L +HP IRV+L +++ Sbjct: 69 EKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDIRVLLDSAS 128 Query: 65 QVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDV 124 V +L +RE D+A+R+LRP +PDLI R L +GL+AS Y++++G+P PG GHD+ Sbjct: 129 AVVDLPKRETDIAIRTLRPENPDLILRKLASWPMGLFASADYLRRNGVPVPGERFRGHDL 188 Query: 125 VIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQLV 184 V+Y+ ++ + T+ GE + RV + V+S +M+ +A+A GLG+ ELP YM + LV Sbjct: 189 VMYEPYWHSQRELTLGGEPIRDGRVVIAVNSNMMVRQALARGLGLCELPLYMGER-DGLV 247 Query: 185 RLWP--ERAEPYDMWLVLHSDLNRTARVRAVADAIVAAY 221 R+WP ER PY++W+V H DL TARVRAV + +V A+ Sbjct: 248 RVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAF 286 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 103/217 (47%) Query: 1 VSAVEKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVL 60 + A E+MET Q + +D + G VRI A D + L P + +L A +P +++ L Sbjct: 65 LGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLKIQL 124 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALA 120 + +L++READ+A+ RP L+ L +LGLYAS Y+ HG P AL Sbjct: 125 VPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDVEALK 184 Query: 121 GHDVVIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTV 180 H + Y + S GE + A E+SS EAV +G GIG L Y+A Sbjct: 185 RHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYIAGQY 244 Query: 181 PQLVRLWPERAEPYDMWLVLHSDLNRTARVRAVADAI 217 P+L+R+ P W H + RVR V D + Sbjct: 245 PELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFL 281 >RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 5 EKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTST 64 E +E+ + L R E + G VRI A++ + VL + L A +P + + L S Sbjct: 74 ESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLILELVPSN 133 Query: 65 QVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDV 124 ++ +L RR+AD+AVR RP+ L++RH+ + LG++A R Y+++ G P LAGH + Sbjct: 134 RLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRGTPATLDDLAGHAL 193 Query: 125 VIYQRAIYASQIDTICGES--TANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQ 182 + Y + + I + G+ R A+ S L L A+ AG GIG +A P Sbjct: 194 IGYDKE--TAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGICQVGLARRDPD 251 Query: 183 LVRLWPERAEP-YDMWLVLHSDLNRTARVRAVADAIVAAYDR 223 LVRL+ + P D WL +H DL + R R V +A+ A R Sbjct: 252 LVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLR 293 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 102/214 (47%) Query: 1 VSAVEKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVL 60 +A E+MET Q Q+ ID + G VRI A D L P + +L A +P +++ L Sbjct: 65 FAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPELKLQL 124 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALA 120 + +L++READ+A+ RP L+S L LGLYAS Y+ ++G P L Sbjct: 125 VPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTVDDLK 184 Query: 121 GHDVVIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTV 180 H + Y + + E + + E+SS + EAV + GIG L Y+A Sbjct: 185 NHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYIARQY 244 Query: 181 PQLVRLWPERAEPYDMWLVLHSDLNRTARVRAVA 214 P+LVRL P+R W H RVR VA Sbjct: 245 PELVRLLPDRTIRRAYWTTYHESARDLVRVRTVA 278 >mlr3988 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 293 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 109/219 (49%) Query: 5 EKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTST 64 E+ME + + G + + G VRI A D L + +L A H + + L Sbjct: 69 ERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHRELTIQLVPVP 128 Query: 65 QVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDV 124 + +L+RREAD+A+ RPT L++ L +LGL+ASR+Y +GLP+ L H + Sbjct: 129 RSFSLSRREADIAITVERPTEGRLVAGKLVDYSLGLFASRAYADANGLPKTAAELGRHPL 188 Query: 125 VIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQLV 184 + Y + S E +A+ R + +SS L EAV +G GIG L T++A ++P+LV Sbjct: 189 IGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFVARSMPELV 248 Query: 185 RLWPERAEPYDMWLVLHSDLNRTARVRAVADAIVAAYDR 223 + WLV H + R++ VA I A +R Sbjct: 249 AVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVER 287