BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0223.p (192 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 142 3e-34 AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 93 3e-19 PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 86 5e-17 RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 82 5e-16 PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 76 4e-14 >mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 197 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 1/193 (0%) Query: 1 MSKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY 60 M++ + R+++ DA + + G+ A+ V+DI A GSF NHF SKEA A E++ Y Sbjct: 1 MARQSLREKLLDAGFRTIWNSGYAAAGVRDIVAAADARPGSFTNHFASKEAFAGEVLDRY 60 Query: 61 ASRRSTLREI-LADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIR 119 + S L E LA D P + RLR Y + +L + GCMIGN++ E + S +R Sbjct: 61 FTYVSGLVEAALAQDGTPPIGRLRRYLDVITSKLEAHDWARGCMIGNLSLEAAVHSEPLR 120 Query: 120 EQLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAF 179 QL+ I+ W I GQ G I A+ LA FLL++W+GA LR++VERSP+ Sbjct: 121 VQLVAIFERWRQPFAVCIAEGQAAGDIAKTFEAEDLADFLLSSWQGAMLRMKVERSPEPL 180 Query: 180 DQFMEVVFNKVLS 192 ++F +++FN + Sbjct: 181 ERFKKIIFNTAFA 193 >AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 208 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 1/178 (0%) Query: 6 TRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDYASRRS 65 TR ++ ++ LL G+ + I E VPKGSFY F SK+ ++ Y + + Sbjct: 7 TRTRLISEGMRQLLAHGYEGVGIGPILKEVDVPKGSFYYFFASKDDFVVAVIEAYEQKYA 66 Query: 66 TLRE-ILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIREQLLR 124 +RE + +D L AL+RL YF L L G GC+ G + + +S ++R+ L Sbjct: 67 HIRERLFSDTSLRALQRLSVYFETLELELKQDGPYAGCLYGVIAQTSAGRSALVRDALAI 126 Query: 125 IYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFDQF 182 +G W T++ +T Q + I L ++ A+EGA +RV+ AF +F Sbjct: 127 SFGRWETSIRELLTQAQYEDDIAGDEDVSDLCACIIEAYEGALIRVKATGDIAAFTRF 184 >PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 196 Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 2/181 (1%) Query: 5 NTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSD-YASR 63 + R+ I +++ RG++ + V +I A +PKGSFY++F+SKEA A + + YA R Sbjct: 7 DKRELILAKGSEVMTRRGYHGTGVLEIVQAARIPKGSFYHYFDSKEAFAQQALEHVYAPR 66 Query: 64 RSTLREILADDRLPALERLRGYFTALNQRLV-DRGFQHGCMIGNMTAELSEQSPVIREQL 122 + + L D R ER+ Y+ L + ++ C IG+++ E++E SP I ++ Sbjct: 67 LARYAQALGDSRFSPRERVLRYYGELLEHFARQEKPEYHCFIGSLSFEMAELSPPIAAKV 126 Query: 123 LRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFDQF 182 I + L+ + ++ G + +LAGF+ AW+GA R +V + F Sbjct: 127 ESILQASAQILQDCLEQAREAGELAADEDCASLAGFIGFAWQGALARFKVGAGLAPLNAF 186 Query: 183 M 183 M Sbjct: 187 M 187 >RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 1/179 (0%) Query: 2 SKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY- 60 ++ +TRD+I DA +L+L RGF+A + +I A VPKGSFY +F+SKE ++ Y Sbjct: 15 ARHDTRDRILDAGAELILGRGFSAVGLAEILGRAQVPKGSFYYYFDSKENFGVALLERYF 74 Query: 61 ASRRSTLREILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIRE 120 + + + D R+ A ERL YF A + C+ ++ E+S+ S +R+ Sbjct: 75 QDYEAGVVSLFNDTRMTARERLIRYFAAWIDLHERSACEVTCLAVKLSGEVSDLSEPMRK 134 Query: 121 QLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAF 179 L + A+ AG DGS+ + LA L W G L + RS F Sbjct: 135 VLSAGMTRMVERIAAAVEAGVADGSLAPVADPRGLAEGLYAMWMGGALLAKAHRSTAPF 193 >PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 194 Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 14/192 (7%) Query: 2 SKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDYA 61 S +TR + D +++ +GF+ + +I AGVPKGSFY++F+SKE ++ DY Sbjct: 4 SYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDY- 62 Query: 62 SRRSTLREILAD-------DRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQ 114 R LAD L A ERL Y+ + C++ ++AE+++ Sbjct: 63 -----FRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADL 117 Query: 115 SPVIREQLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVER 174 S +R L L + G+ DGS+ A+ +A L W GA+L ++ R Sbjct: 118 SESMRITLRDGSDGIIERLVGCLGQGRDDGSLA-PCDARHMASALYQLWLGASLLSKLHR 176 Query: 175 SPDAFDQFMEVV 186 SP + M+ Sbjct: 177 SPGPLETAMQTT 188