BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0221.p         (320 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3136 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...   150   3e-36
AGc929 [NT] COG0840 Methyl-accepting chemotaxis protein Atu Agro...    84   3e-16
RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    69   1e-11
STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal...    69   2e-11
RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    68   3e-11

>RSc3136 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 661

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 1/142 (0%)

Query: 10  QIDKLARRLAGSYPDTFSTDARELLVVGAETTPVLRNGAEVLNLNFGRIDSFSAATGGS- 68
           + D+     A + P  +S D  + + V  + TP  R+G   +NL+F   D F A TGG+ 
Sbjct: 76  EADRFLTAFADAAPGPYSVDPAQTVAVAGKPTPTFRSGDTAMNLDFAIPDKFFARTGGTI 135

Query: 69  ATIFVQRGKDFVRISTSVKKENGERAIGTLLDHAHAGYRDLLAGRSYTGFAQLFGRQYMT 128
           AT+F + G DFVR++TS+KKENGERAIGTLLD AH  YR L+AG S+ G A LFG  YM+
Sbjct: 136 ATVFARTGDDFVRVTTSLKKENGERAIGTLLDRAHPSYRALMAGESFRGLAWLFGVPYMS 195

Query: 129 RYDPVRDAQGRVVAVLYVGIDV 150
           +Y+PVRDA G+VV  LYVG+DV
Sbjct: 196 KYEPVRDAAGKVVGALYVGVDV 217



 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 56/87 (64%)

Query: 222 YWLAQRMVTRPLVDATAAAQQLAKGDLTTMIHVGRRDEIGQLTQAINGVAQGLATIVGAV 281
           YW+ +R V+ PL +    A+++A GDLT      RRDEIGQL  AING+  GL+ IV  V
Sbjct: 354 YWMLRRAVSAPLAEVAGVARRVAAGDLTHRFSGTRRDEIGQLMHAINGLGDGLSGIVDKV 413

Query: 282 RGSSERINIAAHEIAAGNDDLSARAEA 308
           R S+  I  +  +IAAGN DLSAR EA
Sbjct: 414 RASASTIASSTGQIAAGNVDLSARTEA 440


>AGc929 [NT] COG0840 Methyl-accepting chemotaxis protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 622

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 44/211 (20%)

Query: 58  IDSFSAATGGSATIFVQRGKDFVRISTSVKKENGERAIGTLLDHAHAGYRDLLAGRSYTG 117
           +D  +A  GG AT+F  +  +F+R++T++K E GERA GT L   H  +  +  G +Y G
Sbjct: 99  VDRTAAGNGGIATVFEAKAGEFIRLTTNLKNEKGERAAGTKLATDHPAFEKVSKGEAYFG 158

Query: 118 FAQLFGRQYMTRYDPVRDAQGRVVAVLYVGIDVSQRFQVGIGARLGMLAFGIAGTVLGAY 177
            A LFG  YMT Y PV +  G  V +L+VG+ +                         A 
Sbjct: 159 TATLFGTSYMTGYMPVTNKTGATVGILFVGVPMD---------------------FYNAQ 197

Query: 178 VWASVAAVSALPPATSGAPAIIAALLLHYGAIALGLLALGMGGLYWLAQRMVTRPLVDAT 237
           +++                  +  +++  GA+A+    LG+G L +   +   +PL   T
Sbjct: 198 IYS------------------LRDMMVVCGALAM----LGVGLLAYFVIKRTLQPLSKLT 235

Query: 238 AAAQQLAKGDLTTMI-HVGRRDEIGQLTQAI 267
            A + L+ GDL T I +    +E G + +A+
Sbjct: 236 DAVKSLSDGDLETPIPYATNTNEFGNIARAL 266


>RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 608

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 54/92 (58%)

Query: 216 LGMGGLYWLAQRMVTRPLVDATAAAQQLAKGDLTTMIHVGRRDEIGQLTQAINGVAQGLA 275
           +G G L W  +R +T PL  A   A+ + +GDLT  IHV R DE G++  A+  + + L 
Sbjct: 201 VGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQ 260

Query: 276 TIVGAVRGSSERINIAAHEIAAGNDDLSARAE 307
            +VG VR  S+ I  A  +IAAGN DLS R E
Sbjct: 261 GMVGQVRTGSDAIASATQQIAAGNADLSQRTE 292


>STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella
           typhimurium LT2
          Length = 521

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 209 IALGLLALGMGGLY-WLAQRMVTRPLVDATAAAQQLAKGDLTTMIHVGRRDEIGQLTQAI 267
           I L L+++  G +  W   R +TRPL +A   A+ +A GDLT  I    +DE G L QA+
Sbjct: 193 ITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQAL 252

Query: 268 NGVAQGLATIVGAVRGSSERINIAAHEIAAGNDDLSARAE 307
             +   L  IV  V+  SE I+ AA +I AGN DL+AR E
Sbjct: 253 MAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTE 292


>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 189 PPATSGAPAIIAALLLHYGAIALGLLALGMGGLYWLAQRMVTRPLVDATAAAQQLAKGDL 248
             A  GA A I  ++L   A+   LLA+  G       R +TRP+  A   A+ +A+G+L
Sbjct: 180 EAAAQGANAKIQMIVL---AVLATLLAIATGAFIT---RTITRPINHAMHLAEAVAQGNL 233

Query: 249 TTMIHVGRRDEIGQLTQAINGVAQGLATIVGAVRGSSERINIAAHEIAAGNDDLSARAE 307
           T ++ V  +DEIG+L  A+  + + L  IV  VRG ++ I  A+ E+A+GN DLS+R E
Sbjct: 234 THLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTE 292