BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0220.p (155 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3152 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 84 8e-17 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 84 1e-16 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 74 1e-13 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 68 6e-12 Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 67 1e-11 >STM3152 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 93/210 (44%), Gaps = 58/210 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ +A ++ NA H +QA L D AS AG+GG++V VV TM I ASS ++A+I VI Sbjct: 305 MEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSDVVETMNGISASSQQIAEITTVI 364 Query: 61 XPV------------------------------RTRSPTSSACGAMSGIETAIG------ 84 + R+ S + GA IE IG Sbjct: 365 NSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIEALIGESVRRV 424 Query: 85 ----------------------SVATIMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 V TIM+ IA+A Q++ I +V A+ +D +TQQNA Sbjct: 425 AQGAQLVQETGATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVTQQNA 484 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKLA 152 AL+EQ + AA +L + E L V F+L+ Sbjct: 485 ALVEQVSAAAAALERQTEDLQRSVQQFRLS 514 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIG-- 58 MD + + NNA + +QA L AS+ A EGG+VV VV M I S K+ADIIG Sbjct: 305 MDELGSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKGINDGSKKIADIIGVI 364 Query: 59 ------------------------------VIXPVRTRSPTSSACG-------------- 74 V VR+ + S+A Sbjct: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKALITSSVEQV 424 Query: 75 ------------AMSGIETAIGSVATIMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 M I AI V+ I+ +I++A A Q+ + +V +AV +D+ TQQNA Sbjct: 425 EQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNA 484 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKLAQ 153 AL+EQ+A AA SL+ +A++LV+ V FKLA+ Sbjct: 485 ALVEQSAAAASSLQGQAQQLVQAVAVFKLAR 515 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 58/209 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ ++ NA + Q+A L NAS A +GG V + TM I SS K+ DIIGVI Sbjct: 305 MEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVI 364 Query: 61 X--------------------------------PVRTRSPTSSACGA--MSGIETAIGSV 86 VR+ + S+A + IE ++G V Sbjct: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHV 424 Query: 87 AT----------IMRD--------------IATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 +T I+RD I+ + Q++ I ++ A+ +D+ TQ+NA Sbjct: 425 STGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENA 484 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKL 151 +L+E++ATAA++L+ +A +L + V FKL Sbjct: 485 SLVEESATAAQALQDQANQLADMVSTFKL 513 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 95/209 (45%), Gaps = 58/209 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ ++ NA + +QA L NAS A +GG+VVG VV TM I SS K+ADIIGVI Sbjct: 305 MEELTSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVI 364 Query: 61 XPV------------------------------RTRSPTSSACGAMSGIETAIGS----- 85 + RS + GA I+ IG Sbjct: 365 EGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRV 424 Query: 86 -----------------------VATIMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 V IM +I+ A A Q+ I +V +AV +DQ+TQQNA Sbjct: 425 RNGTALVEEAGAVIDEVVVAVKRVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNA 484 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKL 151 AL+EQAA AA SL +A+ L VG F++ Sbjct: 485 ALVEQAAAAALSLEEQAQVLRTAVGRFQM 513 >Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 546 Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 7/127 (5%) Query: 30 GEGGKVVGSVVATMGAIRASSHKVADIIGVIXP-VRT----RSPTSSACGAMSGIETAIG 84 G G VV S V T+ + A + K +I G+I VR ++A MS I A+ Sbjct: 401 GRGFAVVASEVRTLASRSAQAAK--EIEGLISESVRLIDLGSDEVATAGKTMSTIVDAVA 458 Query: 85 SVATIMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNAALIEQAATAAESLRHEAEKLVE 144 SV IM++IA A Q+ I +V++A+ ++D++TQQNA+L+E+A+ AA SL +A +L E Sbjct: 459 SVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTE 518 Query: 145 QVGAFKL 151 V F+L Sbjct: 519 AVDVFRL 525