BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0219.p (504 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 169 2e-41 mll9509 [T] COG3706 Response regulator containing a CheY-like re... 156 9e-38 RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum 155 2e-37 slr1047_3 [T] COG2199 FOG Syn Synechocystis 154 4e-37 alr3599 [T] COG3706 Response regulator containing a CheY-like re... 152 2e-36 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Pae Pseudomonas aeruginosa Length = 347 Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 123/194 (63%), Gaps = 1/194 (0%) Query: 312 IDKRSIAENEANEARAQVEKLNQTLERLALQDGLTGLANRRQFDGALAREMSRAVRSGES 371 + +R A E++ Q+ + N L+RL DGLTGL+NRR FD L E R++R Sbjct: 143 LQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQ 202 Query: 372 LALIMIDVDRFKLYNDLYGHLSGDECLRKVGKTILSGERRPGDLAARYGGEEFAIILPDC 431 L+L+MIDVD FK YND +GH++GDE LR+V I G R DLAARYGGEEFA++LP Sbjct: 203 LSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGT 262 Query: 432 DAAGATAIAEQIRLAVRAQQIEH-AANPDGIVTVSLGVGCLPEVKQGMSVRDLIGVADQA 490 GA +AE++R V + QI H P +TVS+GV L G + R LI +ADQA Sbjct: 263 SPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQA 322 Query: 491 LYRAKGDGRDRVGV 504 LY+AK +GR++VG+ Sbjct: 323 LYQAKNNGRNQVGL 336 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Mlo Mesorhizobium loti Length = 354 Score = 156 bits (395), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 118/192 (61%), Gaps = 6/192 (3%) Query: 314 KRSIAENEANEARAQVEKLNQTLERLALQDGLTGLANRRQFDGALAREMSRAVRSGESLA 373 +R A E++ Q+ N LERL DGLTGL NRR FD LA E RA R+ L+ Sbjct: 163 QRDAAYRALRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLS 222 Query: 374 LIMIDVDRFKLYNDLYGHLSGDECLRKVGKTILSGERRPGDLAARYGGEEFAIILPDCDA 433 L+MID D FK YND YGH++GDE L+++ + I SG R DLAARYGGEEF I+L D Sbjct: 223 LLMIDADNFKRYNDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLL 282 Query: 434 AGATAIAEQIRLAVRAQQIEHAANPDGIVTVSLGVG-CLPEVKQGMSVRDLIGVADQALY 492 ++AIAEQ+ VR I H PD VT+S+GV +P + + D + AD AL+ Sbjct: 283 EESSAIAEQLVQGVRELNIPHG--PDR-VTISVGVATTVP--NENETPNDFVNAADLALF 337 Query: 493 RAKGDGRDRVGV 504 RAK +GR+RV + Sbjct: 338 RAKSEGRNRVAL 349 >RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 206 Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/164 (50%), Positives = 99/164 (60%) Query: 339 LALQDGLTGLANRRQFDGALAREMSRAVRSGESLALIMIDVDRFKLYNDLYGHLSGDECL 398 LA+ D LTGL NRR D L +E RA+R ++++MIDVD FK YND YGHL GD L Sbjct: 17 LAITDALTGLPNRRALDAFLDKEWKRALRERWPVSVLMIDVDAFKPYNDHYGHLGGDTAL 76 Query: 399 RKVGKTILSGERRPGDLAARYGGEEFAIILPDCDAAGATAIAEQIRLAVRAQQIEHAANP 458 + V + I + R GDLAARYGGEEF I+LP D GA A+AE IR AV A I HA P Sbjct: 77 KAVARCIQAHASRSGDLAARYGGEEFCIVLPHTDLEGAIAVAEHIRQAVLALHIPHAQGP 136 Query: 459 DGIVTVSLGVGCLPEVKQGMSVRDLIGVADQALYRAKGDGRDRV 502 GI++VS+G G L AD LYRAK GR+R Sbjct: 137 AGILSVSIGAATDTPALSGDRAETLTQAADTQLYRAKTQGRNRT 180 >slr1047_3 [T] COG2199 FOG Syn Synechocystis Length = 184 Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 4/178 (2%) Query: 329 VEKLNQTLERLALQDGLTGLANRRQFDGALAREMSRAVRSGESLALIMIDVDRFKLYNDL 388 +E++NQ L+ LA+ D LT + NRR F L +E + +R ++LI+ DVD FK YNDL Sbjct: 1 LEQVNQRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDL 60 Query: 389 YGHLSGDECLRKVGKTILSGERRPGDLAARYGGEEFAIILPDCDAAGATAIAEQIRLAVR 448 YGH GD+CL+ V K I + +RP D+ ARYGGEEF +ILP D +GA + ++I + Sbjct: 61 YGHQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLA 120 Query: 449 AQQIEHAANPDG-IVTVSLGVG-CLPEVKQGMSVRDLIGVADQALYRAKGDGRDRVGV 504 QI HA +P +T+SLG+G +P + S DLI +ADQALY AK GR++ + Sbjct: 121 EAQISHADSPTSRYLTISLGIGTTVPLLHYHPS--DLIKIADQALYAAKAAGRNQTKL 176 >alr3599 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Nos Nostoc sp. PCC 7120 Length = 344 Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/176 (46%), Positives = 110/176 (62%), Gaps = 2/176 (1%) Query: 328 QVEKLNQTLERLALQDGLTGLANRRQFDGALAREMSRAVRSGESLALIMIDVDRFKLYND 387 Q+E N L+ LA DGLTGLANRR+FD L + V+ G L+LI+ D+D FK YND Sbjct: 163 QLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKFYND 222 Query: 388 LYGHLSGDECLRKVGKTILSGERRPGDLAARYGGEEFAIILPDCDAAGATAIAEQIRLAV 447 YGH +GD CL+KVG + ++ DL ARYGGEEFA+++P A GA +A I+ +V Sbjct: 223 QYGHPTGDICLQKVGAVLSYKAQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAHAIQTSV 282 Query: 448 RAQQIEHAANP-DGIVTVSLGVGCLPEVKQGMSVRDLIGVADQALYRAKGDGRDRV 502 R QI H + +T+S+GV + + S DLI AD+ALY+AK GR+R+ Sbjct: 283 RDLQIAHDKSAVSQHITLSMGVATITPTWES-SPSDLIAAADKALYKAKESGRNRI 337