BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0200.p (272 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20215 [K] COG4977 Transcriptional regulator containing an ami... 239 4e-63 CC2960 Non COG 220 2e-57 mll5195 [K] COG4977 Transcriptional regulator containing an amid... 170 3e-42 PA1850 [K] COG4977 Transcriptional regulator containing an amida... 149 7e-36 CC3367 Non COG 117 3e-26 >SMb20215 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Sme Sinorhizobium meliloti Length = 326 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/319 (43%), Positives = 189/319 (59%), Gaps = 54/319 (16%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAV 60 M +IGF++F L+ F +TAF++AN + GE Y++ ++SE GG ++S++G V Sbjct: 12 MHRIGFVVFPRFQLMGFAA-VTAFEMAN-LALGETV---YEIELLSEAGGEVKSSAGFGV 66 Query: 61 VTHPLDRTAFDTLIVAGG------------------------------------------ 78 +T D TA+DT++ G Sbjct: 67 LTKTFDHTAYDTVMFGAGVQIEPMTPGLVEFARRSFETARRVAAPCTGAFVLAESGLLDG 126 Query: 79 -------AGXARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVELA 131 A +LQ P+V+V+ D+IFI DG VWTSAG++A IDLALA++E+D G +A Sbjct: 127 RRATTHWAFARQLQDRFPAVKVEEDRIFIVDGSVWTSAGMTASIDLALAMVEKDYGQGVA 186 Query: 132 RAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIACLS 191 R+VAR+LVVYHRR GGQSQFS LLE++P S RI+ ++ YA+ +L L+VE LA+ A LS Sbjct: 187 RSVARKLVVYHRRAGGQSQFSALLELEPKSDRIQRSIDYAKANLRRGLSVEELADAAGLS 246 Query: 192 RRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAFLR 251 RQF RAF AETGQ+PAKA+E LR EAAR +E G S++ IA GF +RMRRAFLR Sbjct: 247 ARQFSRAFRAETGQSPAKAVETLRVEAARLMMEQGRHSMDVIAEETGFAIADRMRRAFLR 306 Query: 252 VFGYPPQAIRRAQRRQETL 270 G PPQ IRR R ++ Sbjct: 307 TLGQPPQTIRRNARESASV 325 >CC2960 Non COG Length = 312 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/315 (42%), Positives = 181/315 (57%), Gaps = 59/315 (18%) Query: 2 RKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAVV 61 R IGFL++ LLD TGP+ AF++A R+ G Y L +S +GG++ S SG V Sbjct: 3 RAIGFLVYPGFQLLDATGPIAAFEIAGRLAPGA-----YSLHFLSLRGGLIPSTSGMVVQ 57 Query: 62 TH------PLDR-------------TAFDTLIVAGGAGXAR------------------- 83 T PLD + +TL AG + Sbjct: 58 TKALAEAPPLDTLLIAGGDAVKVPASCPETLAFVRQAGRSARRVASVCSGTYVLAEAGLL 117 Query: 84 --------------LQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVE 129 QR +P V+++ D+I+I+DG VW+SAGI+AGIDL+LALI D G Sbjct: 118 DGKRATTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEGEA 177 Query: 130 LARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIAC 189 +AR A++LVVYH RPGGQSQ S L+++ P GR LS+AR +L E L+VE+LA+ A Sbjct: 178 VARRTAQQLVVYHHRPGGQSQHSALIDLRP--GRFDGLLSWARQNLSEPLSVEQLADRAA 235 Query: 190 LSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAF 249 +S R F R F+ ETG TPAKAIE+LR EAAR +++ +E++A GF DPERMRRAF Sbjct: 236 MSPRNFARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVEDVALETGFGDPERMRRAF 295 Query: 250 LRVFGYPPQAIRRAQ 264 +R FG PPQA+RRA+ Sbjct: 296 IRAFGQPPQALRRAR 310 >mll5195 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 325 Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 146/273 (53%), Gaps = 55/273 (20%) Query: 2 RKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAVV 61 RK+G ++ LLD GP AF++A G Y L +++ G +ES+SG + Sbjct: 33 RKVGIIIHPGFQLLDAAGPAAAFELAEGFCVGS-----YMLEILAPGGEEIESSSGMRLA 87 Query: 62 T------HPLDRTAFD-------------------------TLIVAGGA----------- 79 PLD T V GA Sbjct: 88 ARPLSMEEPLDTAIISGGEIIRSMAAAQEIVAWLRRTGVRRTASVCTGAYLLAEAGLLDG 147 Query: 80 --------GXARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVELA 131 R +P+V++D+++IF++DG VWTSAGISAGIDLALALIE+DLG +A Sbjct: 148 RRATTHWWSTHDFARRYPAVKLDAERIFVRDGSVWTSAGISAGIDLALALIEDDLGPAIA 207 Query: 132 RAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIACLS 191 R VA++LVV+ RRPGGQSQFS L+E+ +GR E + + R L + LTVE LA+ A +S Sbjct: 208 RRVAQQLVVHQRRPGGQSQFSALVELGGRTGRFIELIEWMRTALAQPLTVECLADRAAMS 267 Query: 192 RRQFDRAFSAETGQTPAKAIEKLRAEAARPRVE 224 R F RAF AETG TPAKA+E++R E+AR VE Sbjct: 268 PRHFARAFKAETGTTPAKAVERIRLESARIAVE 300 >PA1850 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 334 Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 155/320 (48%), Gaps = 63/320 (19%) Query: 2 RKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAVV 61 R I L++ D LD TGPL F AN R+ +G Y+++V+ E+ + S++G + Sbjct: 5 RLIACLIYPDVMSLDVTGPLQVFASANVERQRQGLPPFYRIQVLGERSEAVPSSAGIRIC 64 Query: 62 THPLDRT----AFDTLIVAGGAGX------------------------------------ 81 R + DTL+V GG G Sbjct: 65 ADLAWRDCPPESLDTLLVPGGLGVEAQTRNADLLAWLKAAEPCIRRLGSVCSGALILAAA 124 Query: 82 ---------------ARLQRMHPSVQVDSDKIF-----IKDGD--VWTSAGISAGIDLAL 119 A L++ P V V D++ +DGD ++TSAG++AGIDLAL Sbjct: 125 GVLDGRPATTHWADVATLRQGFPGVHVQGDRLHTYDPRCRDGDAHIFTSAGVTAGIDLAL 184 Query: 120 ALIEEDLGVELARAVARELVVYHRRPGGQSQFSNLLEMDPP-SGRIRETLSYARNHLHES 178 AL+E DLG LA +VAR LV++ +RPGGQ+QFS L +P + R+ L + +L Sbjct: 185 ALVEADLGRSLALSVARRLVMFLKRPGGQAQFSAWLTPEPSRTPRLAALLEWIPANLAGD 244 Query: 179 LTVERLAEIACLSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVG 238 L++E LA+ AC+S R R F E G P + +E++R EAAR ++ + S+ ++R G Sbjct: 245 LSLEALADQACMSPRTLSRVFLQELGVAPGRYVERVRLEAARALLQDAQASIATVSRLCG 304 Query: 239 FDDPERMRRAFLRVFGYPPQ 258 F PE +RR F + PQ Sbjct: 305 FGHPENLRRTFHKHLSVSPQ 324 >CC3367 Non COG Length = 324 Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 100/179 (55%), Gaps = 2/179 (1%) Query: 84 LQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVELARAVARELVVYHR 143 L+ HP++QV D +++ +GDV TSAG +AGIDL L LI D G E A VAR LVV Sbjct: 141 LRAHHPAIQVQPDVLYVDEGDVLTSAGSAAGIDLGLHLIRRDFGPEAANTVARRLVVPPH 200 Query: 144 RPGGQSQF-SNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIACLSRRQFDRAFSAE 202 R GGQ+QF + + + R+ L R +L + T++ LA +A +S R F R F A Sbjct: 201 RDGGQAQFVQRPVPVAHEASRLGPILDQMRANLADEHTIKTLAALAGMSERTFLRRFEAV 260 Query: 203 TGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAFLRVFGYPPQAIR 261 TG TPA+ + R AR +E S++ +ARAVG P +R F R F P A R Sbjct: 261 TGATPARWLLAERLNHARDLLETASTSIDQVARAVGLGAPA-LRHHFRRQFSTTPGAYR 318