BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0197.p (199 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 192 3e-49 Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 155 7e-38 ECs2357 [K] COG1309 Transcriptional regulator Ecs Escherichia co... 155 7e-38 ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 154 1e-37 STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 153 2e-37 >PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 194 Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 98/196 (50%), Positives = 130/196 (66%), Gaps = 4/196 (2%) Query: 1 MRDTYAETKFSILQAGRRLIAQKGFTGVGLNELLAAADIPKGSFYHYFGSKERYGRELIE 60 M+ +Y +T+ +L G R++A KGF+GVGLNE+L +A +PKGSFYHYF SKE++G+ L+E Sbjct: 1 MKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLE 60 Query: 61 QYVDEYLQRLDKSFSADGQSDTTARERLLTYWGYWLETQCCEIAEHKCLVVKLSAEVADL 120 Y YL +D+ FSA G ARERL++YW WL+ C E +CLVVKLSAEVADL Sbjct: 61 DYFRVYLADMDQRFSAPG---LNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADL 117 Query: 121 SDDMRVALHTGTEAFIARIAEAIRTGVAEGSLHTVLEPYRTAQMLYQMWLGASLLSKLSR 180 S+ MR+ L G++ I R+ + G +GSL + A LYQ+WLGASLLSKL R Sbjct: 118 SESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPC-DARHMASALYQLWLGASLLSKLHR 176 Query: 181 DREALESAMDVTRRVL 196 LE+AM TR +L Sbjct: 177 SPGPLETAMQTTRSLL 192 >Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 199 Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 2 RDTYAETKFSILQAGRRLIAQKGFTGVGLNELLAAADIPKGSFYHYFGSKERYGRELIEQ 61 + T +T+ +L G +L Q+GFTG+GL+ELL A++PKGSFYHYF SKE +G ++E+ Sbjct: 3 KHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLER 62 Query: 62 YVDEYLQRLDKSFSADGQSDTTARERLLTYWGYWLETQCCEIAEHKCLVVKLSAEVADLS 121 + Y QRL + + + R+R+L Y+ L C CL VKLSAEV DLS Sbjct: 63 HYATYHQRLTELLQS---GEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLS 119 Query: 122 DDMRVALHTGTEAFIARIAEAIRTGVAEGSLHTVLEPYRTAQMLYQMWLGASLLSKLSRD 181 +DMR A+ G IA +++A+ G L EP + AQ+LY +WLGA+L +K+SR+ Sbjct: 120 EDMRSAMDKGARGVIALLSQALENGRDSHCLTFCGEPLQQAQVLYALWLGANLQAKISRN 179 Query: 182 REALESAMDVTRRVLVAP 199 E LE+A+ + ++ P Sbjct: 180 SEPLENALAHVKTIIATP 197 >ECs2357 [K] COG1309 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 199 Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 2 RDTYAETKFSILQAGRRLIAQKGFTGVGLNELLAAADIPKGSFYHYFGSKERYGRELIEQ 61 + T +T+ +L G +L Q+GFTG+GL+ELL A++PKGSFYHYF SKE +G ++E+ Sbjct: 3 KHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLER 62 Query: 62 YVDEYLQRLDKSFSADGQSDTTARERLLTYWGYWLETQCCEIAEHKCLVVKLSAEVADLS 121 + Y QRL + + + R+R+L Y+ L C CL VKLSAEV DLS Sbjct: 63 HYATYHQRLTELLQS---GEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLS 119 Query: 122 DDMRVALHTGTEAFIARIAEAIRTGVAEGSLHTVLEPYRTAQMLYQMWLGASLLSKLSRD 181 +DMR A+ G IA +++A+ G L EP + AQ+LY +WLGA+L +K+SR+ Sbjct: 120 EDMRSAMDKGARGVIALLSQALENGRDSHCLTFCGEPLQQAQVLYALWLGANLQAKISRN 179 Query: 182 REALESAMDVTRRVLVAP 199 E LE+A+ + ++ P Sbjct: 180 SEPLENALAHVKTIIATP 197 >ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 Length = 199 Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 3/198 (1%) Query: 2 RDTYAETKFSILQAGRRLIAQKGFTGVGLNELLAAADIPKGSFYHYFGSKERYGRELIEQ 61 + T +T+ +L G +L Q+GFTG+GL+ELL A++PKGSFYHYF SKE +G ++E+ Sbjct: 3 KHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLER 62 Query: 62 YVDEYLQRLDKSFSADGQSDTTARERLLTYWGYWLETQCCEIAEHKCLVVKLSAEVADLS 121 + Y QRL + + + R+R+L Y+ L C CL VKLSAEV DLS Sbjct: 63 HYAAYHQRLTELLQS---GEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLS 119 Query: 122 DDMRVALHTGTEAFIARIAEAIRTGVAEGSLHTVLEPYRTAQMLYQMWLGASLLSKLSRD 181 +DMR A+ G IA +++A+ G L EP + AQ+LY +WLGA+L +K+SR Sbjct: 120 EDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRS 179 Query: 182 REALESAMDVTRRVLVAP 199 E LE+A+ + ++ P Sbjct: 180 FEPLENALAHVKNIIATP 197 >STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 199 Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 3/198 (1%) Query: 2 RDTYAETKFSILQAGRRLIAQKGFTGVGLNELLAAADIPKGSFYHYFGSKERYGRELIEQ 61 + T +T+ +L G +L Q+GFTG+GL+ELL A +PKGSFYHYF SKE +G ++E+ Sbjct: 3 KQTEHDTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGSFYHYFRSKEAFGVAMLER 62 Query: 62 YVDEYLQRLDKSFSADGQSDTTARERLLTYWGYWLETQCCEIAEHKCLVVKLSAEVADLS 121 + Y QRL F++ R+RLL ++ L+ C + A CL VKLSAEV DLS Sbjct: 63 HYACYHQRLTAHFTS---GPGNHRDRLLAWYQETLKQFCQQGAISGCLTVKLSAEVCDLS 119 Query: 122 DDMRVALHTGTEAFIARIAEAIRTGVAEGSLHTVLEPYRTAQMLYQMWLGASLLSKLSRD 181 +DMR + G + +A +A A+ G LH +P AQ+LY +WLGA+L +K+SR Sbjct: 120 EDMRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQAQVLYALWLGANLQAKISRS 179 Query: 182 REALESAMDVTRRVLVAP 199 LE+A+ + ++ P Sbjct: 180 AAPLENALAHVKTIIATP 197