BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0194.p         (695 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120                     164   8e-40
RSc0375_3 [T] COG2199 FOG Rso Ralstonia solanacearum                  142   3e-33
PA1727_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa                   142   4e-33
slr1305_3 [T] COG2199 FOG Syn Synechocystis                           141   4e-33
slr0359_3 [T] COG2199 FOG Syn Synechocystis                           139   2e-32

>all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120
          Length = 199

 Score =  164 bits (414), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 121/198 (61%), Gaps = 9/198 (4%)

Query: 498 VRRRAGHLFIAFLHDITERQAFRNSLQEMALTDILTGLPNRRAFTEKLPEAMARAIREPQ 557
           ++R A  LF        E +   + L+ +A  D LTGLPNR+ F E+L E++  A     
Sbjct: 6   LKRTAAELF----RSNNELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNL 61

Query: 558 QMGLLFMDVDGFKSINDKYGHEAGDELLVKFAERLIDAVREVDTVARLAGDEFTVILERL 617
            +GLLF+D+DGFK +ND  GHE GD LLV  A+RL +++R  DTVARL GDEFTVIL+ +
Sbjct: 62  SLGLLFIDLDGFKQVNDSLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAI 121

Query: 618 HGPADAMGVAEKILVSMRRPFILTAATVNVSTSIGVAIYEPGQHIDQDALVAQADKAMYA 677
                A  VAEKIL ++  P +L   T  VS SIG++IY P   +D D L+ +AD AMY 
Sbjct: 122 PNVQVAAKVAEKILANITEPIVLNGCTAKVSVSIGISIY-PETSLDPDTLLKKADAAMYR 180

Query: 678 AKRAGKNRVEW----NTE 691
           AK  GKNR E     NTE
Sbjct: 181 AKHLGKNRFELADRVNTE 198


>RSc0375_3 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 172

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 105/163 (64%), Gaps = 2/163 (1%)

Query: 523 LQEMALTDILTGLPNRRAFTEKLPEAMARAIREPQQMGLLFMDVDGFKSINDKYGHEAGD 582
           L  MA  D LTGL NR    E+L  A+ R  R+P  MG+L++DVD FK IND YGH AGD
Sbjct: 8   LSRMAHFDALTGLANRYELYERLRAALERRQRQPAPMGVLYLDVDHFKRINDTYGHAAGD 67

Query: 583 ELLVKFAERLIDAVREVDTVARLAGDEFTVILERLHGPADAMGVAEKILVSMRRPFILTA 642
            +LV+ A RL   VR  DTVARLAGDEF ++L+ +  P DA+  A K++ ++R P  L  
Sbjct: 68  AVLVEVARRLQHTVRRTDTVARLAGDEFVILLDPIDTPDDALHTAGKVVAAIRPPIQLRG 127

Query: 643 -ATVNVSTSIGVAIYEPGQHIDQDALVAQADKAMYAAKRAGKN 684
              +NV+ SIGVA   P +  D DA++ +AD+A+Y AK  G++
Sbjct: 128 DIALNVTASIGVACPSP-EAADADAVLREADRALYWAKSRGRD 169


>PA1727_2 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 194

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 2/162 (1%)

Query: 523 LQEMALTDILTGLPNRRAFTEKLPEAMARAIREPQQMGLLFMDVDGFKSINDKYGHEAGD 582
           L ++AL D LT LPNR    ++L +A+ +AIR+ ++  +LFMD+DGFK++ND YGH  GD
Sbjct: 22  LIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGFKAVNDAYGHHLGD 81

Query: 583 ELLVKFAERLIDAVREVDTVARLAGDEFTVILERLHGPADAMGVAEKILVSMRRPFILTA 642
            LL++ AER+   VR  DT+ARL GDEF +++E    PADA  +AEK++  + +P+ ++ 
Sbjct: 82  LLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVKRISQPYQISR 140

Query: 643 ATVNVSTSIGVAIYEPGQHIDQDALVAQADKAMYAAKRAGKN 684
             V +S SIG+A+Y PG    +  L+  AD AMY AK  G+N
Sbjct: 141 HEVRISASIGIALY-PGDGQTRHELMINADAAMYHAKDQGRN 181


>slr1305_3 [T] COG2199 FOG Syn Synechocystis
          Length = 188

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 522 SLQEMALTDILTGLPNRRAFTEKLPEAMARAIREPQQMGLLFMDVDGFKSINDKYGHEAG 581
           +L   A  D LTGLPNR    ++L +A+  A+R+    GL+F+D+D FK +ND  GH+AG
Sbjct: 8   ALFHQAHYDHLTGLPNRILAKDRLQQAIESALRQKHIFGLMFLDLDNFKKVNDTLGHDAG 67

Query: 582 DELLVKFAERLIDAVREVDTVARLAGDEFTVILERLHGPADAMGVAEKILVSMRRPFILT 641
           D+LLV+ +ERL  A+R+ DTVARL GDEF +IL+++      M +A+++L  MR+P  L 
Sbjct: 68  DQLLVEVSERLQRALRQTDTVARLGGDEFLIILDQVSHSRKLMAIAQRLLRVMRQPVNLQ 127

Query: 642 AATVNVSTSIGVAIYEPGQHIDQDALVAQADKAMYAAKRAGKNRVEWNT 690
                V  SIG+ ++ P      D L+  AD AMYAAK AG+N   + T
Sbjct: 128 GLEFFVHGSIGITVF-PDDGFHADVLLRNADTAMYAAKLAGRNMFRFFT 175


>slr0359_3 [T] COG2199 FOG Syn Synechocystis
          Length = 187

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 103/175 (58%), Gaps = 2/175 (1%)

Query: 512 DITERQAFRNSLQEMALTDILTGLPNRRAFTEKLPEAMARAIREPQ-QMGLLFMDVDGFK 570
           DITER+     L   A  D LT LPNR  F ++L  A+ R +R    +  +LF+D+DGFK
Sbjct: 5   DITERKLAAEKLHYNANHDSLTNLPNRSMFLDRLGHALQRNLRRRDLRFAVLFLDLDGFK 64

Query: 571 SINDKYGHEAGDELLVKFAERLIDAVREVDTVARLAGDEFTVILERLHGPADAMGVAEKI 630
            IND  GH  GD LL   A RL   +R  DT+ARL GDEFT+++E +  P D + VA++I
Sbjct: 65  IINDSLGHSCGDLLLQGIAHRLRQCLRPEDTLARLGGDEFTMLIENITCPEDVIAVAQRI 124

Query: 631 LVSMRRPFILTAATVNVSTSIGVAIYEPGQHIDQDALVAQADKAMYAAKRAGKNR 685
              +++PF L    +  +TSIG+A+  P     QD L   AD AMY AK AGK R
Sbjct: 125 HQELQKPFNLNGQEIFTNTSIGIALNHPHYGHPQDVL-RDADTAMYRAKAAGKGR 178