BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0180.p (235 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 155 1e-37 AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 144 2e-34 SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 142 5e-34 AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium ... 140 2e-33 mlr8446 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 137 2e-32 >PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 259 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 110/182 (60%) Query: 39 DVIYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAF 98 +++Y I +I+E RL PGTKL EE L IF V+RT +R L+RL+HE ++ PNRGA Sbjct: 25 EIVYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEQVVLLRPNRGAV 84 Query: 99 IASPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQAREANDRRAIIR 158 +ASP+ EAR I ARR +E A+ ++ E +A+LR V E + DR A IR Sbjct: 85 VASPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDRGAGIR 144 Query: 159 LSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAGK 218 LSGEFH+++A+M N + R L S T LII Y+S C+ DEH +I+DAI G Sbjct: 145 LSGEFHLKLAEMARNAPLVSFQRSLVSQTSLIIAQYESGGRSHCSFDEHNEILDAIEKGD 204 Query: 219 VE 220 E Sbjct: 205 KE 206 >AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 266 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 3/186 (1%) Query: 41 IYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAFIA 100 I + + +I++ RL PGTKL E ++ +F V+RT VR L L++EGL+ NRGAF++ Sbjct: 51 IRDTLRDAIVDRRLAPGTKLSEAEVGTLFEVSRTVVRAALQMLAYEGLVKAERNRGAFVS 110 Query: 101 SPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQ---AREANDRRAII 157 +PTP EAR +F++RRLIEP ++ E P +LR H+ E++ R RRA I Sbjct: 111 NPTPDEARQVFASRRLIEPGVVDAAIEKITPAAAKKLREHLVEESRHQLERGPTARRAEI 170 Query: 158 RLSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAG 217 R SG+FH+ +A + N ++ K M EL + + L+I LY V +C H++H D++DA+ A Sbjct: 171 RASGDFHLMLAALAGNAILEKFMDELVARSSLVIALYGRSGVSSCGHNDHADLLDALEAK 230 Query: 218 KVEXCR 223 R Sbjct: 231 DAAKAR 236 >SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 225 Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 112/185 (60%) Query: 36 MAGDVIYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNR 95 M+ + I ER+ SI E RL PG +L EE+LA IF+V+R RVR+ L L+ +GL+T IPNR Sbjct: 7 MSVEQIVERVWLSIAERRLRPGVQLKEEQLASIFHVSRARVRQALTVLARDGLVTIIPNR 66 Query: 96 GAFIASPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQAREANDRRA 155 GAF+ P+ EAR +F R+ +E ++ LC + + +LR HV E A + Sbjct: 67 GAFVCKPSVEEARDVFFVRQAVERCVVERLCSSMSKDGVKRLRDHVKNERIANAEDSTTD 126 Query: 156 IIRLSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIA 215 II+LSG FH+ +A++ + + MR+L + + LI +Y + T C DEH DI+ AIA Sbjct: 127 IIKLSGGFHLLLAELTGSDFLFTTMRDLIARSSLITAVYRNTTRFNCGPDEHADIVKAIA 186 Query: 216 AGKVE 220 A + + Sbjct: 187 AKEAQ 191 >AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 225 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 106/175 (60%) Query: 41 IYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAFIA 100 I E++ SI E RL PG +L EE+LA IF V+R R+R+ L+ L +GL+T +PNRGAF++ Sbjct: 12 IVEKVWLSIAERRLRPGVQLKEEQLATIFGVSRARIRQALSVLERDGLVTIVPNRGAFVS 71 Query: 101 SPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQAREANDRRAIIRLS 160 P+ EAR +F RR +E ++ LC + +LR HVA E A N II+LS Sbjct: 72 KPSVEEARDVFFVRRTVEQCVVERLCRSATKTDLKKLRDHVAKERVANTRNVTTDIIKLS 131 Query: 161 GEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIA 215 G FH+ +A+ + + + MR+L S + LI +Y + C DEH +I+DAIA Sbjct: 132 GGFHLLLAETLGSDFLFTTMRDLISRSSLITAVYRNTDRFNCGPDEHAEIVDAIA 186 >mlr8446 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 252 Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 109/183 (59%), Gaps = 3/183 (1%) Query: 41 IYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAFIA 100 I + + +I++ RL PGTKL E ++ +F+V+RT R L LS EGL+ T NRGAF+A Sbjct: 37 IRDNLRDAIVDRRLAPGTKLSEGEVGTLFDVSRTVARAALQMLSFEGLVRTERNRGAFVA 96 Query: 101 SPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQ---AREANDRRAII 157 +P+P EAR +F++RRLIEP++ C IA RA + E + R RR+ I Sbjct: 97 NPSPEEARQVFASRRLIEPSIAIAACGRVTSADIAAFRAQLDEEGRFIAERGPTARRSEI 156 Query: 158 RLSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAG 217 + SG+FH+ +A + N ++ + M EL + + L+I LY V AC H EH +I+ A+ + Sbjct: 157 KASGDFHLLLASVAGNAILQRFMEELVARSSLVIALYGRSGVSACGHSEHTEIVGALESS 216 Query: 218 KVE 220 E Sbjct: 217 DCE 219