BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0134.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4101 [TK] COG0745 Response regulators consisting of a CheY-lik... 375 e-104 SMb20219 [TK] COG0745 Response regulators consisting of a CheY-l... 365 e-101 mlr2740 [TK] COG0745 Response regulators consisting of a CheY-li... 228 1e-59 PA3192 [TK] COG0745 Response regulators consisting of a CheY-lik... 219 4e-57 mlr1334 [TK] COG0745 Response regulators consisting of a CheY-li... 208 9e-54 >PA4101 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 246 Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/245 (74%), Positives = 214/245 (87%) Query: 1 MENQDHILIVDDDRGIRELLAAYLEKNGMRVSLAANGRQMRAVLEQGAPDLIVLDLMLPG 60 ME+ DHILIVDDDR IREL+ YL+KNG+R ++ A+GRQMRA LE DLIVLD+M+PG Sbjct: 1 MEHVDHILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPG 60 Query: 61 EDGLVLCRELRVGKFKAVPVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSV 120 +DGL+LCRELRVGK KA PVLMLTAR++ETDRI+GLEMGADDYLTKPF+ REL+ARI +V Sbjct: 61 DDGLLLCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAV 120 Query: 121 LRRARMLPPNMQVTEAVQMLGFGDWRLDTTARHLLDRDGTMVALSGAEYRLLRVFLDHPQ 180 LRR RMLPPN+ V+E+ +++GFG W+LDT+ARHLLD GT+VALSGAEYRLLRVFLDHPQ Sbjct: 121 LRRTRMLPPNLTVSESSRLIGFGQWQLDTSARHLLDDAGTVVALSGAEYRLLRVFLDHPQ 180 Query: 181 RVLTRDQLLNLTQGRASDPFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSAAVT 240 RVL+RDQLLNLTQGR +D FDRSIDLLVSRLRQRL D AREP YIKT+R+EGYVFS V Sbjct: 181 RVLSRDQLLNLTQGREADIFDRSIDLLVSRLRQRLGDDAREPEYIKTVRSEGYVFSLPVR 240 Query: 241 LIEGE 245 L+E Sbjct: 241 LVEAH 245 >SMb20219 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 245 Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/243 (72%), Positives = 212/243 (87%) Query: 1 MENQDHILIVDDDRGIRELLAAYLEKNGMRVSLAANGRQMRAVLEQGAPDLIVLDLMLPG 60 ME+ DHILIVDDDR IREL++AYL+KNG+RV+ A+GRQMR LE DLI+LDLM+PG Sbjct: 1 MEHIDHILIVDDDREIRELVSAYLKKNGLRVTAVADGRQMRTFLEANTVDLIILDLMMPG 60 Query: 61 EDGLVLCRELRVGKFKAVPVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSV 120 +DGLVL RELRVG+ KA P++MLTARS+E DRI+GLEMGADDY+ KPF+ REL+ARI++V Sbjct: 61 DDGLVLSRELRVGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAV 120 Query: 121 LRRARMLPPNMQVTEAVQMLGFGDWRLDTTARHLLDRDGTMVALSGAEYRLLRVFLDHPQ 180 LRRARMLP N+QV+EA Q+L FG W+LDTTARHL+D DGT +ALSGAEYRLLRVF+DHPQ Sbjct: 121 LRRARMLPANLQVSEAGQLLRFGQWKLDTTARHLIDADGTAIALSGAEYRLLRVFVDHPQ 180 Query: 181 RVLTRDQLLNLTQGRASDPFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSAAVT 240 RVL RDQLLNLTQGR ++ FDRSIDLLVSR+RQRL D AREP YI+T+R+EGYVFS V Sbjct: 181 RVLNRDQLLNLTQGREAELFDRSIDLLVSRVRQRLGDDAREPTYIRTVRSEGYVFSVPVE 240 Query: 241 LIE 243 ++E Sbjct: 241 IME 243 >mlr2740 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 238 Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 4/240 (1%) Query: 1 MENQDHILIVDDDRGIRELLAAYLEKNGMRVSLAANGRQMRAVLEQGAPDLIVLDLMLPG 60 M++ HILIVDDD+GIR+LL + +K G+ S+AA+G +M AVL + DLIVLD+MLPG Sbjct: 1 MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPG 60 Query: 61 EDGLVLCRELRVGKFKAVPVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSV 120 + GL LCR+LR + P++MLTA +E TDR+VGLEMGADDY+ KPF REL+ARIR+V Sbjct: 61 KSGLELCRDLRAQY--STPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAV 118 Query: 121 LRRARMLPPNMQVTEAVQMLGFGDWRLDTTARHLLDRDGTMVALSGAEYRLLRVFLDHPQ 180 LRR P A Q+ F W +D + R L D V L+ AE+ LL+ F+ Q Sbjct: 119 LRRNGAAEPKRAT--AKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQ 176 Query: 181 RVLTRDQLLNLTQGRASDPFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSAAVT 240 RVLTRDQL+ L+ G + FDRSID+LVSRLR+++ D + P+ I T+R+ GY F T Sbjct: 177 RVLTRDQLIELSGGDSDYSFDRSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQFLPETT 236 >PA3192 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 242 Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 6/238 (2%) Query: 3 NQDHILIVDDDRGIRELLAAYLEKNGMRVSLAANGRQMRAVLEQGAPDLIVLDLMLPGED 62 N IL+VDDD+ IRELL YL + G +V + G R L + L +LD+MLP ED Sbjct: 4 NGRSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDED 63 Query: 63 GLVLCRELRVG-KFKAVPVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVL 121 G LCR +R + +P++MLTA S+E DR++GLE+GADDYL KPF+ REL+ARI+++L Sbjct: 64 GFSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALL 123 Query: 122 RRARMLPPNMQVTEAVQMLGFGDWRLDTTARHLLDRDGTMVALSGAEYRLLRVFLDHPQR 181 RRA+ QV +L F DWRLDT + L DG LSGA++ LL++FLDHPQ+ Sbjct: 124 RRAQF----TQVRGG-DVLAFEDWRLDTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQ 178 Query: 182 VLTRDQLLNLTQGRASDPFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSAAV 239 +L RD + N T+GR P +R +D+ VSRLRQRL D + PR I+T+R GY+ +A V Sbjct: 179 ILDRDTIANATRGREVLPLERIVDMAVSRLRQRLRDTGKAPRLIQTVRGSGYLLAAQV 236 >mlr1334 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 255 Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 115/234 (49%), Positives = 151/234 (64%), Gaps = 5/234 (2%) Query: 6 HILIVDDDRGIRELLAAYLEKNGMRVSLAANGRQMRAVLEQGAPDLIVLDLMLPGEDGLV 65 HILIV+DD I +L L +NGM V +A NG +M A L DLIVLD+MLPGE+GL Sbjct: 24 HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83 Query: 66 LCRELRVGKFKAVPVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRAR 125 +CR LR VP+LMLTA EE DRI GLE+GADDY+TKPF+ REL ARIR++LRR Sbjct: 84 ICRRLRA--HTNVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTA 141 Query: 126 MLPPNMQVTEAVQMLGFGDWRLDTTARHLLDRDGTMVALSGAEYRLLRVFLDHPQRVLTR 185 P T ++L F WRLD R L D VA + E+ LL F + RVL+R Sbjct: 142 YAPDERDRT---KVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNAGRVLSR 198 Query: 186 DQLLNLTQGRASDPFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSAAV 239 ++LL++T + P +RS+D+ VSR+RQ++ AR+P +KT+R GY+F+A V Sbjct: 199 EELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLKTVRLGGYIFTATV 252