BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0118.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0232 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...   144   6e-35
RSc2249 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   140   6e-34
YPO3649 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   139   1e-33
SSO2884 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   134   4e-32
AGpA316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   131   3e-31

>PA0232 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Pae Pseudomonas aeruginosa
          Length = 133

 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 91/123 (73%)

Query: 3   QELFDTGLKTRREVLGAEYVDASIKNADDFNLPMQELVTQYCWGDIWNRPGLDRRTRSFL 62
           ++ ++ G++ RR VLGA +V+ S+ N   FN   QE++T++ WGDIW RPGL R TRS +
Sbjct: 4   KQRYEAGMQVRRAVLGAAHVERSLANLTPFNEEFQEMITRHAWGDIWTRPGLPRHTRSLV 63

Query: 63  NLAMLTALNRPHEIKLHVRGAVNNGLSKQDIQEVFLQAAIYCGVPAAIDSFKIAKEVFKE 122
            +AML  +NR  E+KLH+R A NNG+S+ +I+EV +Q+AIYCG+PAA  +F +A+ V+ E
Sbjct: 64  TIAMLIGMNRNEELKLHLRAAKNNGVSRDEIKEVIMQSAIYCGIPAANATFHLAESVWDE 123

Query: 123 MGI 125
           +G+
Sbjct: 124 LGV 126


>RSc2249 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Rso Ralstonia solanacearum
          Length = 131

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 83/115 (72%)

Query: 9   GLKTRREVLGAEYVDASIKNADDFNLPMQELVTQYCWGDIWNRPGLDRRTRSFLNLAMLT 68
           G++ RR VLG  +VD +     +   P Q+L+T+Y WG+IW RPGL R TRS L +AM+ 
Sbjct: 10  GMQVRRAVLGDAHVDRATAAQTELTAPFQDLITRYAWGEIWTRPGLPRHTRSLLTIAMMV 69

Query: 69  ALNRPHEIKLHVRGAVNNGLSKQDIQEVFLQAAIYCGVPAAIDSFKIAKEVFKEM 123
           ALNR  E++LH+R A NNG+++++IQEV LQ AIYCGVPAA  +F +A+ VF +M
Sbjct: 70  ALNRDGELRLHLRAAANNGVTREEIQEVLLQTAIYCGVPAANHAFHLAQAVFADM 124


>YPO3649 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Ype Yersinia pestis
          Length = 131

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 87/119 (73%)

Query: 3   QELFDTGLKTRREVLGAEYVDASIKNADDFNLPMQELVTQYCWGDIWNRPGLDRRTRSFL 62
           Q+ F+ G   R+ VLGAE+V+ S  N+D+FN P+Q+L+T+YCWG++W  P L  +TRS L
Sbjct: 4   QDRFERGFHNRKVVLGAEHVETSWGNSDEFNRPVQKLITEYCWGEVWGDPALTFKTRSML 63

Query: 63  NLAMLTALNRPHEIKLHVRGAVNNGLSKQDIQEVFLQAAIYCGVPAAIDSFKIAKEVFK 121
           N+ +LTA+ + HE+ LHV+GA+ NG+++++I+ V LQ  +YCG P A+ +F+IA    K
Sbjct: 64  NIGILTAMGQHHELSLHVKGALRNGVTREEIRAVLLQTVVYCGAPVALAAFRIASAAIK 122


>SSO2884 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Sso Sulfolobus solfataricus
          Length = 139

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 91/122 (74%), Gaps = 1/122 (0%)

Query: 3   QELFDTGLKTRREVLGAEYVDASIKNADDFNLPMQELVTQYCWGDIWNRPG-LDRRTRSF 61
           ++L++ GL+ R++V+G EYV+ S+    DFN  +QE+VT + WG IW R   + ++ RS 
Sbjct: 12  KKLYEKGLEVRKKVMGREYVEKSLSQTTDFNRELQEMVTIFAWGLIWTRDDVIPKKIRSL 71

Query: 62  LNLAMLTALNRPHEIKLHVRGAVNNGLSKQDIQEVFLQAAIYCGVPAAIDSFKIAKEVFK 121
           +N+ +L+ LNR +E+KLHV+GA+ NG ++++I+EV LQ   YCG+PAA+DSF+IA+E  K
Sbjct: 72  INIGILSCLNRQNELKLHVKGAIRNGCTEEEIKEVLLQVGAYCGLPAAMDSFRIAQEAIK 131

Query: 122 EM 123
           E+
Sbjct: 132 EL 133


>AGpA316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 129

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 83/123 (67%)

Query: 1   MNQELFDTGLKTRREVLGAEYVDASIKNADDFNLPMQELVTQYCWGDIWNRPGLDRRTRS 60
           M++ L   G   RR+VLG  YVD +++ ADDF+ P Q+++ +YCWG  W    LD + RS
Sbjct: 1   MDKPLQQAGEAVRRKVLGDSYVDRALEKADDFSRPFQDILNEYCWGMAWTDDALDLKQRS 60

Query: 61  FLNLAMLTALNRPHEIKLHVRGAVNNGLSKQDIQEVFLQAAIYCGVPAAIDSFKIAKEVF 120
            LNL ML AL R HE ++H RGA+ NGL++ +++    Q A+YCG+PA +++F+ A+EV 
Sbjct: 61  LLNLGMLAALGRMHEFRIHFRGALRNGLTEAELRAALTQIAVYCGIPAGVEAFRAAQEVR 120

Query: 121 KEM 123
            EM
Sbjct: 121 AEM 123