BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0116.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value APE2521 [E] COG0683 ABC-type branched-chain amino acid transport... 139 9e-33 BMEII0875 [E] COG0683 ABC-type branched-chain amino acid transpo... 130 2e-30 PA4913 [E] COG0683 ABC-type branched-chain amino acid transport ... 116 4e-26 BMEII0868 [E] COG0683 ABC-type branched-chain amino acid transpo... 111 1e-24 SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 99 8e-21 >APE2521 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Ape Aeropyrum pernix Length = 430 Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 19 INVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAATTAA 78 I +GVILPLSG A+ G + R+GIE DEIN+ GG+K+ GGAK+ ++ DS T A Sbjct: 39 IKIGVILPLSGRLAETGADLRRGIEFAVDEINSQGGVKACGGAKLTVVYGDSAGKPETGA 98 Query: 79 TVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTM-SFSDQITGRGFKNVFQVV 137 A+RLI+Q +A++GA+ SS+T SEV ER VP + S S +T RG+K F+V Sbjct: 99 AEAERLISQEGVIALVGAYQSSVTKTASEVAERYQVPFINPDSTSPALTERGYKWFFRVT 158 Query: 138 SKGSLIGKCQFDYAVALASGNQK----VNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIV 193 + Q D+ L NQK + AI++EDT +G+ A + +V Sbjct: 159 PHDEMFAAQQADFIDWL---NQKYGLNLRTFAIIHEDTEWGSKVAEAWKKYFTQHGYTLV 215 Query: 194 MDEAYPLG-ISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKI 241 + +Y ++ + + KL+ + I+ SY+ D++L+++TM+ Q Sbjct: 216 EEVSYHAATVTSLDSEVQKLKAANPDILLAASYIQDAILLVQTMKAQNF 264 >BMEII0875 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 419 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 134/238 (56%), Gaps = 12/238 (5%) Query: 2 LALAAALPTLSLAQQKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGA 61 +AL++ + T +LA + G + P+SG+ A G S +G+EL DE+NAAGGIK G Sbjct: 30 VALSSTVFTAALAD---VKFGSLYPISGSLALLGEESARGLELAVDEVNAAGGIK---GE 83 Query: 62 KIKLIVADSTSAATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTM-S 120 K+ L D+ A A+RLI+ AI G ++S+ +A S+V+E G+P M + Sbjct: 84 KVVLERGDAVDN-NQATGEARRLISLVGVKAIFGTYSSARVIAASQVSELAGIPYFEMGA 142 Query: 121 FSDQITGRGFKNVFQVVSKGSLIGKCQFDYAV-ALASG---NQKVNKIAIVYEDTAYGTS 176 +D++TGRG + +F+ + K D + +A G + K KI I+YED++YGTS Sbjct: 143 VADEVTGRGLQYLFRTNPTAENMAKDSVDMLIKGIAPGLGKDPKDMKIGIIYEDSSYGTS 202 Query: 177 QATGLRDAAKAAKTEIVMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIR 234 A D AKAA +V+ YP D++ L+ +LR GA +V SY NDS+L ++ Sbjct: 203 VAGHQEDNAKAAGLTVVLKSGYPSNTVDMSSLVLELREKGADVVMQTSYQNDSVLFLQ 260 >PA4913 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 374 Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 23/248 (9%) Query: 1 MLALAAA----LPTLSLAQQKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIK 56 +LALA + L T +LA + +GV P +GANA FG +G A++INAAGGI Sbjct: 10 ILALAVSSVMGLSTHALAD---VVIGVAGPHTGANASFGEQYWRGASQAAEDINAAGGIN 66 Query: 57 SLGGAKIKLIVADSTSAATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPL 116 G KIKL+ AD A VA RL+ Q++ +A++G F SS T+ SEV + G+ Sbjct: 67 ---GEKIKLVKADDACEPKQAVAVANRLVDQDKAIAVVGHFCSSSTIPASEVYDEAGIIA 123 Query: 117 LTM-SFSDQITGRGFKNVFQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGT 175 +T S + Q+T RG +F++ + G DY V + K K+A++++ YG Sbjct: 124 ITPGSTNPQVTERGLSGMFRMCGRDDQQGVVAGDYIVNVL----KAKKVAVIHDKDTYG- 178 Query: 176 SQATGLRDAAKAAKTEI----VMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLL 231 GL DA +A ++ V+ E G D L+ K+R SGA++V+ ++ Sbjct: 179 ---QGLADATRAQLNKLGVKEVLYEGLTRGEKDFNALVTKIRASGAEVVYFGGLHPEAGP 235 Query: 232 IIRTMRQQ 239 ++R MR+Q Sbjct: 236 LVRQMREQ 243 >BMEII0868 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 387 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 11/226 (4%) Query: 19 INVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAATTAA 78 I +G + P SG A G S +G+E+ +EINA GG++ G KI L+ D+ A Sbjct: 12 IKMGSLYPFSGPLALLGDESARGLEIAVEEINAKGGVQ---GEKIVLVRGDAVDN-NQAI 67 Query: 79 TVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTM-SFSDQITGRGFKNVFQVV 137 A+RLI+ I G+F+S +A S+V+E G+P + + +D+IT RG +NV++ Sbjct: 68 GEARRLISVENVAGIFGSFSSGRAVAASQVSELAGLPYFELGAVADEITDRGLENVYRAN 127 Query: 138 SKGS-----LIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEI 192 ++ Q A L ++ + KIA++YED++YGTS A K A + Sbjct: 128 PYARDFAQMIVEMLQKKIAPKLGRDSKDL-KIAVIYEDSSYGTSVAKHEETFLKEAGLNM 186 Query: 193 VMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQ 238 V+ ++YP D++ L+ L+++GA +V SY +DS+L ++ + Sbjct: 187 VLSQSYPGNTVDMSSLVLDLKSAGADVVLQTSYQSDSVLFLQQANE 232 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 17/228 (7%) Query: 19 INVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAATTAA 78 I VGV PL+G NA FG ++G E A++INAAGGI G +IK+++ D S Sbjct: 25 ILVGVGGPLTGPNAAFGAQLQKGAEQAAEDINAAGGIN---GEQIKVVLGDDVSDPKQGV 81 Query: 79 TVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLT-MSFSDQITGRGFKNVFQVV 137 +VAQ+ + ++G F S +++ SE+ G+ +T S + Q T RG N F+ Sbjct: 82 SVAQKFVADG-VKFVVGHFNSGVSIPASEIYAENGILQVTPASTNPQFTERGLWNTFRTC 140 Query: 138 SKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIVMDEA 197 + G A A + N K K+A++++ T YG GL D K + E + EA Sbjct: 141 GRDDQQGAV----AGAYIAANFKDAKVAVIHDKTPYG----QGLADETKKSMNEAGVTEA 192 Query: 198 YPLGIS----DVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKI 241 GI+ D + LI K++ +G IV+ ++ LI+R M+ Q + Sbjct: 193 LYEGINTGDKDFSALIAKMKQAGVSIVYYGGLHTEAGLIMRQMKDQGL 240