BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0113.p (328 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid trans... 203 4e-52 APE2523 [E] COG4177 ABC-type branched-chain amino acid transport... 152 1e-36 BMEII0101 [E] COG4177 ABC-type branched-chain amino acid transpo... 139 9e-33 AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ... 138 2e-32 mll3976 Non COG 123 5e-28 >BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 315 Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 115/290 (39%), Positives = 169/290 (58%), Gaps = 3/290 (1%) Query: 28 DQGYAIRVLILVMLFAAMAQSWNIVGGLANQISLGHAAFFGIGTYTSTILLIRFGISPWL 87 + + + I + LFAA++ +WNIVGG A Q+SLGHA F+GIG YT IL GISPW Sbjct: 16 NNAFVSHIFITICLFAALSTAWNIVGGFAGQMSLGHAVFYGIGGYTGVILF-NMGISPWF 74 Query: 88 GMLAAMLVAALAGAILSIPTMRLRGHYFALATLAFGEVMRAIANTWTSLTGGPVGISVPF 147 M +AAL G ++S P RL+G +++LA++AF EV R +A + LTGG G+ + Sbjct: 75 SMFIGAFIAALVGMVISYPCFRLKGPFYSLASIAFLEVFRVLALHFGWLTGGATGLMIQL 134 Query: 148 SQPSLSLMQFKSSLPYYYIMLGALVITTVIFILISRSKLGYRLRAVKANPEAAEVIGVNT 207 + M F+ P I+ G L++T I + RS+LG+ L A + AA GV T Sbjct: 135 -KLGWVWMVFRERWPSLLIVFGMLLVTLAITWAVRRSRLGFYLVATRERESAARAAGVRT 193 Query: 208 VRTKVMAAVISAALMGACGTLYAQFNFFFDPDTAFSLTGVSIRVALICIIGGIGTAVGPI 267 VR +++A IS+AL GT +A + F +P FSL SI++A+ +IGG+GT GP+ Sbjct: 194 VRVRLIAVAISSALCAMLGTFHAMYLTFIEPAAMFSLA-FSIQIAMFALIGGLGTVAGPL 252 Query: 268 IGAFFIIPVEELFNDLLSGQAAGVSQLGYGLILIAIILIEPHGISALLER 317 +GA ++P+ E L A G+ YGL+LI ++L P+GI + R Sbjct: 253 LGAVLLVPITEWARASLGASALGLHGFVYGLVLILVVLFMPNGIMGAINR 302 >APE2523 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 332 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 168/309 (54%), Gaps = 6/309 (1%) Query: 17 LVLAIFPWFLKDQG--YAIRVLILVMLFAAMAQSWNIVGGLANQISLGHAAFFGIGTYTS 74 ++LA+ P L G + + ++ L +++ A +WN++ G SLGHA FFG+G YT Sbjct: 24 MILAVAPVLLDLAGKPFYVNMIFLSLMYGISAMAWNLLMGYTGLFSLGHAVFFGVGGYTV 83 Query: 75 TILLIRFGISPWLGMLAAMLVAALAGAILSIPTMRLRGHYFALATLAFGEVMRAIANTWT 134 +L +R+ ++PW+G+ A L AA+ A LS P +RLR H+F LAT+A GE+ R W Sbjct: 84 IVLALRYNVTPWIGLPVAGLTAAMLAAALSPPLLRLRSHWFTLATIALGEIFRLSFAHW- 142 Query: 135 SLTGGPVGISVPFSQPSLSLMQFKSSLPYYYIMLGALVITTVIFILISRSKLGYRLRAVK 194 G G+ +P S+ S+ +QF + Y YI + L + + I SK G+ ++ ++ Sbjct: 143 DYVGASAGLQMPISERSIYYVQFAGATVYSYIAMAILAVELLFLWKIINSKTGFYMQTIR 202 Query: 195 ANPEAAEVIGVNTVRTKVMAAVISAALMGACGTLYAQFNFFFDPDTAFSLTGVSIRVALI 254 + A+ +G+NT K ++ VISA G G LYA + DP F L +S +A+ Sbjct: 203 EDELVAQTLGINTFNYKALSLVISAFFTGLAGGLYAMRFRYVDPFAVFDLITISTYIAIA 262 Query: 255 CIIGGIGTAVGPIIGAFFIIPVEELFN-DLLSG--QAAGVSQLGYGLILIAIILIEPHGI 311 IIGGI T +GP +G+F +P+ E +++ + G+ G+IL+ I L P G+ Sbjct: 263 GIIGGIYTFLGPQVGSFIFVPISEYVRANIVQAFPRVYGLHVAVLGVILLLISLFAPEGV 322 Query: 312 SALLERGKK 320 + R K Sbjct: 323 LGYIRRRWK 331 >BMEII0101 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 315 Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 164/295 (55%), Gaps = 17/295 (5%) Query: 33 IRVLILVMLFAAMAQSWNIVGGLANQISLGHAAFFGIGTYTSTILLIRFGISPWLGMLAA 92 ++++ ++ A +AQ+WNI+GG S G++ F+G+G Y + I +++F + + G Sbjct: 28 MQLMFDALIIATLAQAWNIIGGFTGYASFGNSVFYGLGAYGAGIAMVQFNLPFFAGAAIG 87 Query: 93 MLVAALAGAILSIPTMRLRGHYFALATLAFGEVMRAIANTWTSLTGGPVGISVPFSQPSL 152 ++ A + ++ +P +RL+GHYFA+ATLA +VM AI + G +G+ +P Sbjct: 88 IVAAVVFAMLIGLPILRLKGHYFAIATLALPQVMAAITAN-VPVAGENIGLVLPL----- 141 Query: 153 SLMQFKSSLPYYYIMLGALVITTVIFILISRSKLGYRLRAVKANPEAAEVIGVNTVRTKV 212 + +Y L L+I T + L++RS+ G+ L A++ N E A +G+NT K+ Sbjct: 142 ----LNNDTFFYESALILLIIATCVVALLTRSRFGFGLIAIRENEEGAAAMGINTTLYKI 197 Query: 213 MAAVISAALMGACGTLYAQFNFFFDPDTAFSLTGVSIRVALICIIGGIGTAVGPIIGAFF 272 +A ++S A G L A F DP+ A+ + +++++ ++ + GG GT GP+ GA F Sbjct: 198 LALMLSGAFCAMAGALQAYKITFLDPEAAYQVQ-LNVQMIIMAVFGGAGTIFGPVFGALF 256 Query: 273 IIPVEELFNDLLSGQAAGVSQLGYGLILIAIILIEPHGISALLERGKKMWKGKRY 327 + + ++ LS V+ + +G++++ +++ P G++ L+ + +G RY Sbjct: 257 L----QWVSNWLSTAYTDVAGMFFGIVIVVAVVLMPRGLADLMRNLPR--QGWRY 305 >AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 323 Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/324 (30%), Positives = 166/324 (51%), Gaps = 22/324 (6%) Query: 10 FRWLLLLLVLAIFPWFLKDQGYAIRVLILVMLFAAMAQSWNIVGGLANQISLGHAAFFGI 69 F + ++L++ + P L YA+R+ L +++ A NI+ G Q SL AF+G+ Sbjct: 5 FVYPVILILAVLLP--LTGSSYALRISTLFIIYTIAAMGLNIIIGYTGQASLAQGAFYGL 62 Query: 70 GTYTSTILLIRFGISPWLGMLAAMLVAALAGAILSIPTMRLRGHYFALATLAFGEVMRAI 129 G Y S +L++ G S W ++ A+ A ++ + T+RL+G YFA+ATL F ++ + Sbjct: 63 GAYVSALLVLN-GWSFWASVIVAIAFVAFVAFLIGLMTLRLKGAYFAIATLLFNVIIYEV 121 Query: 130 ANTWTSLTGGPVGI-SVPFSQPSLSL----MQFKSSLPYYYIMLGALVITTVIFILISRS 184 + W +T GP G+ +P PS+ L + F + +YY+ML L++ T+++ LI RS Sbjct: 122 VDKWDEVTRGPRGLFGIP--SPSIELSGISISFSGTYNFYYLMLAVLIVMTLLYWLIIRS 179 Query: 185 KLGYRLRAVKANPEAAEVIGVNTVRTKVMAAVISAALMGACGTLYAQFNFFFDPDTAFSL 244 G + A++ N AE GVN + KV + V+SA G Y+ + PD + Sbjct: 180 SFGSIIVAIRENELLAEYAGVNLTKFKVASFVLSAIFAAVAGAFYSAYIGSIFPDITSFV 239 Query: 245 TGVSIRVALICIIGGIGTAVGPIIGAFFIIPVEELFNDLLSGQAAGVSQLGYGLILIAII 304 + A+ I GG GT +GP IG + + E+F L A + L G++ + I Sbjct: 240 NSFAFLTAI--IFGGAGTMLGPFIGTAVVTLINEVFFTL-----AQYTVLVQGIVFLLAI 292 Query: 305 LIEPHGI-----SALLERGKKMWK 323 L P G+ S E+G+K+ K Sbjct: 293 LFMPKGVMGAYYSRKAEKGEKLPK 316 >mll3976 Non COG Length = 531 Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 25/274 (9%) Query: 29 QGYAIRVLILVMLFAAMAQSWNIVGGLANQISLGHAAFFGIGTYTSTILLIRFGISPWLG 88 + I++LI VML A NIV GLA + LG+ AF+ +G Y +L +G+S W+ Sbjct: 202 DNFGIQILIYVML----AWGLNIVVGLAGLLDLGYVAFYALGAYAYALLATHYGLSFWIL 257 Query: 89 MLAAMLVAALAGAILSIPTMRLRGHYFALATLAFGEVMRAIANTWTSLTGGPVGISVPFS 148 + AA +AAL G +L P +RLRG Y A+ TLAFGE++R + W +T G GIS Sbjct: 258 LPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLAFGEIIRLVLINWREVTNGSAGISGIPK 317 Query: 149 QPSLSLMQFKSSLP-------------------YYYIMLGALVITTVIFILISRSKLGYR 189 LM F S P YY++LG ++T + I + R +G Sbjct: 318 VSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLYYLILGLCLLTAFVTIRLRRLPVGRA 377 Query: 190 LRAVKANPEAAEVIGVNTVRTKVMAAVISAALMGACGTLYAQFNFFFDPDTAFSLTGVSI 249 A++ + A +G+NT TK+ A A G G+ +A F P++ L S Sbjct: 378 WEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFFAARQGFVSPESFVFLE--SA 435 Query: 250 RVALICIIGGIGTAVGPIIGAFFIIPVEELFNDL 283 + I ++GG+G+ VG + A +I E +L Sbjct: 436 IILAIVVLGGMGSLVGIAVAAMVMIGGTEALREL 469