BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0100.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2037 [E] COG0410 ABC-type branched-chain amino acid transport... 144 1e-34 RSc2245 [E] COG0410 ABC-type branched-chain amino acid transport... 135 5e-32 AF0822 [E] COG0410 ABC-type branched-chain amino acid transport ... 132 4e-31 AGc4373 [E] COG0410 ABC-type branched-chain amino acid transport... 127 2e-29 YPO1191 [E] COG0410 ABC-type branched-chain amino acid transport... 127 3e-29 >RSc2037 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 230 Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 127/220 (57%), Gaps = 5/220 (2%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 ML+IQ+++ G +LR+++ E AG L A++GRNG GKTTLL+ +MG++P G I++ Sbjct: 1 MLQIQQLNQYYGGSHILRNVSFEVPAGKLTALLGRNGVGKTTLLKCLMGVLPATSGTIDW 60 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLPKGQIDERLEQVLL 120 +G + +P ++R S G+ Y P+ R +FP +VE+NL P G D + Sbjct: 61 EGRAIHKLPAYERVSRGLAYVPQGREIFPRLTVEENLLIGAAARRAPSGVPDS----IYA 116 Query: 121 AVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESLRK 180 P L M R G LSGGQ + A+GRALM+ RL++LDEP +G+ P + E +LR+ Sbjct: 117 LFPVLAQMKGRRGGDLSGGQQQQLAIGRALMSEPRLLILDEPTEGIQPSVIQEIGRTLRR 176 Query: 181 LRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAAND 220 L D + V++ E R + D + + RGE++A D Sbjct: 177 LVD-EFGMSVLLVEQYYDFARRIADRYVVMRRGEVIAQGD 215 >RSc2245 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 233 Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 8/219 (3%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 +L +++V+ VL D++ AG LA++GRNG GKTTLL +MG L GRI + Sbjct: 4 LLSLERVTAGYGNAVVLDDVSFGLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGRIRW 63 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLPKGQIDERLEQVLL 120 G D+A VP H+R+ G+G+ P++R MFP+ +VE++L + P G D + +V Sbjct: 64 RGADIARVPPHRRARAGLGWVPQERWMFPSLTVEEHL----TAVARP-GAWD--VARVYR 116 Query: 121 AVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESLRK 180 A P+L+ G+ LSGG+ ++ A+ RAL+ L+LLDEP +GLAPI+ E ++R Sbjct: 117 AFPRLEERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRA 176 Query: 181 LRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAAN 219 L D + V++ E + L +L L L+RG ++ A+ Sbjct: 177 LVD-EGGMAVILVEQHARLALELTRRALVLDRGRIVHAS 214 >AF0822 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Afu Archaeoglobus fulgidus Length = 238 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 + +++ + V VLR + E G +++++G NGAGK+TL R I GLI + GRI F Sbjct: 5 LFEVKDLHVAYGSYEVLRGVNLEVDRGEIVSIIGSNGAGKSTLFRTISGLIKPRSGRIIF 64 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLPKGQIDERLEQVLL 120 +G D+A + S+GI + PE R +FP SV NL K ERLE V Sbjct: 65 EGEDIAGKSPEEIVSIGITHCPEGRFLFPELSVYKNLLLGYYTKRKDKKGFKERLEYVFE 124 Query: 121 AVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESLRK 180 P LK + + +SGG+ ++ A+ RALM +L+LLDEP GL+P L+ E Sbjct: 125 IFPVLKERINQRAGTMSGGEQQMLAIARALMPSPKLLLLDEPSLGLSPKLSWSVFEV--- 181 Query: 181 LRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAANDAN 222 L++I ++V+E N SL + D T +E GE+ + A+ Sbjct: 182 LKEIKKDTAILVSEQNASLCLKVSDRTYVMELGEIRLSGKAD 223 >AGc4373 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 231 Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 8/218 (3%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 ML ++ +++ + LR ++ + G + V+GRNG GK++LLRA+ G P G I F Sbjct: 1 MLTVENINLHYGAAQALRGVSLKAEMGKITCVLGRNGVGKSSLLRAVTGQQPTSAGSISF 60 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLPKGQIDERL--EQV 118 DG L + + R+ G+GY P+ R +FP SV++NL LP+ ER + + Sbjct: 61 DGAPLDGLAPYHRAKRGVGYVPQGREIFPLLSVQENLE--SGYAPLPR---KERFIPDDI 115 Query: 119 LLAVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESL 178 P L+ ML R G LSGGQ + A+GRAL+ ++++LDEP +G+ P + + ++ Sbjct: 116 FSLFPVLQSMLGRRGGDLSGGQQQQLAIGRALVTRPKILVLDEPTEGIQPSIIKDIGRAI 175 Query: 179 RKLRDINPKLCVVVTESNRSLLRDLPDATLTLERGELM 216 + LRD + + +++ E R+L D ++RGE++ Sbjct: 176 KYLRD-STGMAILLVEQYLDFCRELADYVYIMDRGEIV 212 >YPO1191 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 232 Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 9/219 (4%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 ML++ ++ G +LR + E G + ++GRNG GKTTLL+ ++GL+P+++G I + Sbjct: 1 MLQVNELDQYYGGSHILRGLTFEARVGEVTCLLGRNGVGKTTLLKCLIGLVPIKNGSITW 60 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGL---PKGQIDERLEQ 117 +G +++ HQR GI Y P+ R +FP +VE+N+ +LGL P Q E Sbjct: 61 EGKNISHQSPHQRVKEGIAYVPQGREIFPRLTVEENI-----LLGLSRFPGSQSKSVPEH 115 Query: 118 VLLAVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAES 177 + P L+ M R G LSGGQ + A+GRAL RL++LDEP +G+ P + E Sbjct: 116 IYQLFPVLQEMKHRRGGDLSGGQQQQLAIGRALACQPRLLILDEPTEGIQPSVIKEIGGV 175 Query: 178 LRKLRDINPKLCVVVTESNRSLLRDLPDATLTLERGELM 216 ++KL + +++ E +L D L + RG+++ Sbjct: 176 IKKL-AAQGDMAILLVEQFYDFAAELADNYLVMSRGKIV 213