BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0089.p (284 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1493 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 218 1e-56 AGc448 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 217 2e-56 mll5050 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 214 1e-55 mll1582 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 212 8e-55 AGpAbx130 [K] COG0583 Transcriptional regulator Atu Agrobacteriu... 211 2e-54 >SMa1493 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 307 Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/275 (38%), Positives = 171/275 (62%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F RAAA++G+T + +S TIK +E ++ +RL RTTRSV++TEAG L +LAP ++ I+ Sbjct: 20 SFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAGERLLRSLAPRISAIR 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 + ++ ++ D+PSGTV+I S A L+ P L + +P I +E+S DN +IV Sbjct: 80 DEIAALMAFRDKPSGTVKITLSDHALESLVWPKLQPVLLEYPDIRLELSRDNGFRNIVED 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD GIR+G+ V+ DM+AV++G + + VA+PDY +R P+ EL++HNCI R + Sbjct: 140 GFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHPQELIQHNCINSRQAT 199 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 GG + W+FE Q +++ V G+L F+ ++DAA++G GI ++ ED +A+G L Sbjct: 200 GGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHGIAYLPEDLVAGHIAAGRLV 259 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMR 276 +L S +++YYP R H + VD +R Sbjct: 260 ALLEPWSPPFAGYYIYYPSRHHNSPAFKVIVDALR 294 >AGc448 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 296 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 163/275 (59%), Gaps = 1/275 (0%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F +AAAE+ + P+AVS + S+EA L +RL +RTTRSVS TE G L L PALA I Sbjct: 20 SFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQLLETLGPALADID 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 + + +P+G +RI +A LI P L F+ +P I++EIS D+ DIV Sbjct: 80 AVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEISTDDRFEDIVAK 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD G+R+G+ + DM+AV+ + +V AP YF E P+ +L++H CIR+R+S Sbjct: 140 GFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAPPREPRDLIRHRCIRRRFS- 198 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 G + W+ E + + +DVQG LI + + AAI G G+ FVFE ++++A G L Sbjct: 199 SGLIYRWELEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGLAFVFEQRVEEDIAEGRLI 258 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMR 276 R+L D F++YYP R+ M LRAFVDF R Sbjct: 259 RVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFR 293 >mll5050 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 296 Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/275 (40%), Positives = 164/275 (59%), Gaps = 1/275 (0%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F AA E+ + P+AVS + S+EA+L VRL R+TRSV+ TE GA L L PAL+ I Sbjct: 20 SFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQLLERLRPALSEID 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 +L L A D+P+G +R++ A +++ P L AF +++P I +EI +++ +D+V Sbjct: 80 LALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDIVLEILIEDRFTDVVEG 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD G+R+G+ +Q DM+AV++G + VV AP YF P +L H CIR R+S Sbjct: 140 GFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPRPHHPRDLADHRCIRFRFS- 198 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 G + W+F + ++I QG LI DE + AAI G G+ FVFE + + LA G L Sbjct: 199 SGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGLAFVFEPYVRAPLADGRLI 258 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMR 276 R+L + F +YYP R+ M LRAFVDF + Sbjct: 259 RVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFK 293 >mll1582 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 212 bits (539), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 110/276 (39%), Positives = 172/276 (62%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F RAAA + V+P A+S++I+ +EA++ VRL NRTTRSVS T AG +L + LA A ++ Sbjct: 20 SFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAGDALFSRLAVAFGELE 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 +++++V A D+P+G++RIN VA I P L F ++P I + + +D+ L+DIV Sbjct: 80 SAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIALTVIVDDTLADIVEG 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 FD GIR+G+R++ DMVAV+L + VAAP Y R P+ EL +H CI+ + Sbjct: 140 RFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAIPRHPQELHQHQCIKFEWPG 199 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 GG + W+F R+ ++I ++G L ++ +L+A + G GI ++FE + + G L Sbjct: 200 GGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVGIAYMFEYQVRPWIEQGRLV 259 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRS 277 R L S F+LY+P +H+P LRAF+DFMR+ Sbjct: 260 RFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRA 295 >AGpAbx130 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 164/274 (59%), Gaps = 1/274 (0%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F AA E+ +TP+A+S +IK +E +LNVRLFNRTTRSVSLTEAG L + L PA+A I+ Sbjct: 27 SFRSAADELNMTPSAISHSIKVLEERLNVRLFNRTTRSVSLTEAGERLASKLKPAMASIE 86 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 ++ E+ PSGTVRIN+S A R+++ P L F+ +P ++++I D LSDIV Sbjct: 87 EAVQELEGNGPVPSGTVRINASEGAIRLVLRPVLAPFLREYPQVHLDIVSDGRLSDIVAD 146 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD GIR+ + V DMVA+ + + VA+P+YF RG P +L H+CIR R+ Sbjct: 147 GFDAGIRLAEAVPKDMVAIPVMGEVRFAAVASPEYFERRGYPLIPQDLHSHDCIRFRFES 206 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 G + W+FE +I+V G L + +++AAI G GI FV + A + L G L Sbjct: 207 GA-IYRWEFERMGASERINVSGPLTLSDQPLMVEAAIDGIGIAFVPDHLATEALEHGRLE 265 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFM 275 R+L LYY R+H+ LRA ++ + Sbjct: 266 RVLEDWCPALPGLCLYYSGRRHVSSGLRALINML 299