BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0069.p (516 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 215 2e-55 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 196 8e-50 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 194 5e-49 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 194 6e-49 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 193 7e-49 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 195/298 (65%) Query: 219 LPLRKSINELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSI 278 +PLR +++ I++G+L +LG+L NA+ M ++L +MI+EIR G+S +S Sbjct: 314 VPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIRIGVSQVSH 373 Query: 279 ASGELSMGNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEE 338 ASGE++ GN DLS RTE QAA+ E + + +L V + + A +A + A+EA +++ Sbjct: 374 ASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLATEASQTAQQ 433 Query: 339 GIQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVV 398 G + V+ V+ M +I SS++++ + S I SIA QTN+LALNAAVEAARAG+ GRGFAVV Sbjct: 434 GGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGEQGRGFAVV 493 Query: 399 AKEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKV 458 A EVR LA RS +A + I+ LI S+ + NAG V A + ++++ +++S V +M ++ Sbjct: 494 ASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSHVRDIMAEI 553 Query: 459 ASGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 AS + EQ+ + ++ A+ ++D TTQQNAALVE+ A+ + L Q+ L+ V+VFR Sbjct: 554 ASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQAVAVFRL 611 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 124/334 (37%), Positives = 202/334 (60%), Gaps = 11/334 (3%) Query: 190 SFNKLLLISSIVSIVSVGAVLALAYQTWF-------LPLRKSINELHLISSGELEGQNEH 242 S+N+ + + +VS++ AVL + WF P+ + I + I+SG+L + + Sbjct: 188 SYNQAMWV--LVSVLI--AVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDV 243 Query: 243 KAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAASTA 302 + + ++G L L M+ L+ + ++R+G +++ + E++MGN DLS RTE QAAS Sbjct: 244 EGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLE 303 Query: 303 EITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMNS 362 E + + +L V + A AR A A A +++G + V V+ M +I SS+++ Sbjct: 304 ETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIAD 363 Query: 363 VVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIKN 422 ++S I+ IA QTN+LALNAAVEAARAG+ GRGFAVVA EVR LA RS +A IK LI++ Sbjct: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIED 423 Query: 423 SMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQT 482 S+ R + G V +A +D++ A++ V +M ++AS + EQ+ +D++ A+ ++D+ Sbjct: 424 SVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRV 483 Query: 483 TQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 TQQNA+LVE+ A+ L Q+ L+ V+VFR Sbjct: 484 TQQNASLVEESAAAAAALEEQASRLTQAVAVFRI 517 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 177/297 (59%) Query: 220 PLRKSINELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIA 279 PL++ + + I+ G+L + E + ++G L L M++SLI + +R S+ Sbjct: 220 PLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTG 279 Query: 280 SGELSMGNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEG 339 +GE+S G+ DLS RTE QA++ E + + +L V + + AR A A A + +G Sbjct: 280 AGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKG 339 Query: 340 IQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVA 399 + V V M +I ESS ++ + S I+ IA QTN+LALNAAVEAARAG+ GRGFAVVA Sbjct: 340 GRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 399 Query: 400 KEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVA 459 EVR LA+RS +A + IK LI+NS+ R + G +V A + ++ A++ V +M ++A Sbjct: 400 GEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIA 459 Query: 460 SGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 S + EQ+ ++++ A+ ++D TQQNA+LVE+ A+ L Q+ L V+ FR Sbjct: 460 SASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRI 516 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 182/300 (60%) Query: 215 QTWFLPLRKSINELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGIS 274 Q PL I + I++G+L E ++G L +L M+ L++++ E+R G Sbjct: 216 QILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGAD 275 Query: 275 SMSIASGELSMGNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQN 334 ++ + E+++GN DLS RTE QAAS E + + +L V + A AR A + A A Sbjct: 276 AIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASE 335 Query: 335 ISEEGIQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRG 394 +++G + V+ V+ M EI SS+++ + S I+ IA QTN+LALNAAVEAARAG+ GRG Sbjct: 336 TAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRG 395 Query: 395 FAVVAKEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTM 454 FAVVA EVR LA RS +A + IK LI +S+ R + G V V +A + + A++ V + Sbjct: 396 FAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDI 455 Query: 455 MVKVASGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVF 514 M ++AS + EQ+ +D+I A+ ++D+ TQQNA+LVE+ ++ L Q+ L+ +SVF Sbjct: 456 MGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVF 515 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 193 bits (491), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 128/325 (39%), Positives = 201/325 (61%), Gaps = 5/325 (1%) Query: 195 LLISSIVSIVSVGAVLALAY---QTWFLPLRKSINELHLISSGELEGQNEHKAAGDLGLL 251 L+I +IV V + + +A A+ + +PL + + IS G L Q + ++G L Sbjct: 191 LIIGAIV--VGILSAVACAFGLDRAISVPLSRMLGSFGEISRGNLTEQIVVTSQDEMGAL 248 Query: 252 ENALTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAASTAEITSGLGEL 311 L M++ LI IE +R G S++ A+ +++ GN+DLS+RTE QA+S E S + EL Sbjct: 249 TRGLQDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSLEETASSMEEL 308 Query: 312 IHMVAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMNSVVSTIESIA 371 +V + A+ AR A A A +I+ +G + V V+ MA I +SS+++ ++ IE IA Sbjct: 309 TSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIA 368 Query: 372 AQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIKNSMQRTNAGQ 431 QTN+LALNAAVEAARAG+ GRGFAVVA EVR LA RS A + IK+LI +S+ R G Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGT 428 Query: 432 VKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQTTQQNAALVE 491 V+ A + ID++ A+ V +M ++++ + EQ++ +++++ A+ +D+ TQQNAALVE Sbjct: 429 TLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVE 488 Query: 492 QIYASTEMLTSQSKSLSTTVSVFRC 516 + A+ + L Q++ L TV+ FR Sbjct: 489 EAAAAAQSLEEQARLLRETVASFRL 513