BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0037.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   106   3e-23
PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   100   1e-21
AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t...    91   2e-18
BS_ywbI [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis    87   3e-17
SA2330 [K] COG0583 Transcriptional regulator Sau Staphylococcus ...    84   2e-16

>PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 313

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 89/148 (60%)

Query: 5   YLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSA 64
           ++   A+ YF  V RC SI EA++RLNVASSA++RQI  LE+ +   LF+R P G+ L+ 
Sbjct: 6   HIHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTG 65

Query: 65  GGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPA 124
            GE+ A H   V  + +RV ++L AL+GLR+G + +A  E    D +P ++++ +++YP 
Sbjct: 66  AGEIFARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPD 125

Query: 125 IQFQVYVGPPTMVSRQVRDGNADIGVTF 152
           I   V +     +   V  G  D+G+ F
Sbjct: 126 ITVGVTLLGSQAIPEAVSSGAVDLGLAF 153


>PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 311

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 92/157 (58%)

Query: 6   LQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAG 65
           L   AL Y  EV+  GS+  A+Q LN+  SAISRQ+ SLEE L   L +R P+G+  +  
Sbjct: 4   LSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEA 63

Query: 66  GEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAI 125
           GE+L AH ++ R   + V++ L AL+GLR G++R+A  EGF  D + + ++SF  +YP I
Sbjct: 64  GELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGI 123

Query: 126 QFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKI 162
           + +V +         V++   D+ + +  + + ++ +
Sbjct: 124 ELEVRMAGANEGVALVKEDAVDLALVYAPVEDGELDV 160


>AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 332

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 83/147 (56%)

Query: 6   LQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAG 65
           +Q  AL YF E+VR  S+  A++ LNVA +A+SRQI +LE    + L ER  RG+ L+A 
Sbjct: 33  MQLRALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAA 92

Query: 66  GEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAI 125
           GE+LAA A K   E D V   +  LKGL+ GR+ V A+     + +  ++  F  KYP +
Sbjct: 93  GELLAARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKL 152

Query: 126 QFQVYVGPPTMVSRQVRDGNADIGVTF 152
           +F+V++         +    AD+ V+ 
Sbjct: 153 RFEVHITSARQAMEALGAAEADLVVSL 179


>BS_ywbI [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%)

Query: 11  LRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAGGEMLA 70
           L YFLEV R  S  +ASQ L V+   IS+ I++LEE L   LF R  R + L+  G  + 
Sbjct: 6   LTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDAGHSMY 65

Query: 71  AHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAIQFQVY 130
             AQ++      + ++L  +  ++ G +R+      G  F PR++  F++ YP + FQ+ 
Sbjct: 66  VQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNVTFQLV 125

Query: 131 VGPPTMVSRQVRDGNADIGVT 151
                 V   V DG+ DIGV 
Sbjct: 126 EDGSIKVQEGVGDGSLDIGVV 146


>SA2330 [K] COG0583 Transcriptional regulator Sau Staphylococcus aureus
           N315
          Length = 295

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 78/141 (55%)

Query: 11  LRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAGGEMLA 70
           ++YF+EVV+ G +  AS+ L +A   IS+ I+ +E  + T LF+R  R ++L+  G++  
Sbjct: 9   MKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFY 68

Query: 71  AHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAIQFQVY 130
             ++++    D + +++  L GL +G I +  S    +  +  ++ +F Q+YP + + + 
Sbjct: 69  EKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLI 128

Query: 131 VGPPTMVSRQVRDGNADIGVT 151
                 + +Q+ +   DIGVT
Sbjct: 129 ENGGKTIEQQIINDEVDIGVT 149