BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0035.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0645 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   269   2e-72
VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae     147   1e-35
lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12   144   1e-34
Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli...   144   1e-34
ECs0974 [K] COG1522 Transcriptional regulators Ecs Escherichia c...   144   1e-34

>RSp0645 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 186

 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 145/169 (85%), Gaps = 2/169 (1%)

Query: 3   AIKLRSKSVETESFN--DTLDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERL 60
           AIK RS +           LDRTDRAILK LQRDASISNVALA +V+LS PACLRRVERL
Sbjct: 17  AIKFRSPAAAPPQGAALSALDRTDRAILKWLQRDASISNVALADKVSLSPPACLRRVERL 76

Query: 61  KELGLIKGIVALLNPRALDAGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGE 120
           KELG I+G+VALL P+ALD GTLVMIGVVLDRSTPESF  FEKAVQKV GCLECHVVTGE
Sbjct: 77  KELGCIRGVVALLEPKALDLGTLVMIGVVLDRSTPESFADFEKAVQKVPGCLECHVVTGE 136

Query: 121 FDYFMLVRTKDNDSFNRLHAEQLLYLPGVRQVRTFMVIKEVLSTTQLHL 169
           FDYFMLVRT+DNDS+NRLHAEQLLYLPGVRQ+RTFM +K+VLSTTQL +
Sbjct: 137 FDYFMLVRTRDNDSYNRLHAEQLLYLPGVRQIRTFMTLKQVLSTTQLPI 185


>VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae
          Length = 164

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 93/148 (62%)

Query: 20  LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79
           LDR DR IL  LQ+D  ISNV L+ RV LS   CL RV RL+  G I G  ALLNP+ LD
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71

Query: 80  AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139
           A  LV + + L+R  P+ F  F  AVQK+    ECH+V+G+FDY +  R  D  ++ RL 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131

Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQL 167
            + LL LPGV   RT++V++EV  T QL
Sbjct: 132 GDTLLRLPGVNDTRTYVVMEEVKQTNQL 159


>lrp [K] COG1522 Transcriptional regulators Eco Escherichia coli K12
          Length = 164

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 93/148 (62%)

Query: 20  LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79
           LDR DR IL  LQ+D  ISNV L+ RV LS   CL RV RL+  G I+G  ALLNP  LD
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 80  AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139
           A  LV + + L+R  P+ F  F  AVQK+    ECH+V+G+FDY +  R  D  ++ +L 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQL 167
            E LL LPGV   RT++V++EV  + +L
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRL 159


>Zlrp [K] COG1522 Transcriptional regulators EcZ Escherichia coli O157:H7
           EDL933
          Length = 164

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 93/148 (62%)

Query: 20  LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79
           LDR DR IL  LQ+D  ISNV L+ RV LS   CL RV RL+  G I+G  ALLNP  LD
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 80  AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139
           A  LV + + L+R  P+ F  F  AVQK+    ECH+V+G+FDY +  R  D  ++ +L 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQL 167
            E LL LPGV   RT++V++EV  + +L
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRL 159


>ECs0974 [K] COG1522 Transcriptional regulators Ecs Escherichia coli O157:H7
          Length = 164

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 93/148 (62%)

Query: 20  LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79
           LDR DR IL  LQ+D  ISNV L+ RV LS   CL RV RL+  G I+G  ALLNP  LD
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 80  AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139
           A  LV + + L+R  P+ F  F  AVQK+    ECH+V+G+FDY +  R  D  ++ +L 
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQL 167
            E LL LPGV   RT++V++EV  + +L
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRL 159