BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0024.p (481 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 414 e-115 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 408 e-113 RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 374 e-103 STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi... 367 e-101 RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 363 e-100 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust. Identities = 231/468 (49%), Positives = 296/468 (63%), Gaps = 6/468 (1%) Query: 8 LRTIAGISLISASLAACSLAPSYQQPAFPVAAHWQNDLQKAEPAGTQSDTRQAASIAWTD 67 LR I + S ++ AC+LAP Y++P PVA W PA + T AA + W Sbjct: 2 LRNFTLILVASTAVGACTLAPQYERPVLPVAQTWST------PAPEAATTVSAADLDWRQ 55 Query: 68 FFQDAQLKSVIAAALDHNRDLRMATLNIERARAMYNIQVADQVPNLALNGNGARQRLPAD 127 D +L+ V+ AL NRDLR+A LNIE+ARA Y +Q + P ++ + R R PA Sbjct: 56 VLVDPRLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPAS 115 Query: 128 VNPTGKAGVNSSYFAGVGLAAFEIDLFGRVRNLSEAALQRYLATEQAQRSAQISLIAEVA 187 +PTG+ + A +G A+E+DLFGRVR+L +AALQ YLATEQ RS ++SLIAE+A Sbjct: 116 TSPTGQPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVRVSLIAEIA 175 Query: 188 NTYEALVADRRLLQLTENTLASRADSYERQKQLYAEGASSEYDLRQAESLFEAAKAARAQ 247 N + L AD+ L L + TLA+R DS +Q GA S DLR AE+L E A+A A Sbjct: 176 NAWLTLAADQERLALAKTTLATREDSLRLVRQRVDGGAGSLLDLRNAETLAETARADVAV 235 Query: 248 QERRKTLDENALTVLVGHPLAADIGTANATSAEQVLPDLPAGLPSDLLTARPDILQQEAV 307 + D NALT+L G L D+ A+ VL DLPAGLPSD+L RPD+L E Sbjct: 236 YTAQVAQDRNALTLLAGGDLPVDLLPPGRLDADSVLADLPAGLPSDVLARRPDVLAAERQ 295 Query: 308 LRSQNANIGAARAAFFPRISLTGNFGSASSQLSGLFDSGSRSWSFIPQISIPIFEGGRNI 367 L++ NANIGAARAAFFPRISLTG+ GSAS+ L GLF SG+ WSF PQIS+PIF GG N+ Sbjct: 296 LQAANANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANV 355 Query: 368 ANLNVAETDKKIAVAQYEKTVQVAFREVADALAGRATLADEAGAVKAQEAAESARYGFAR 427 ANLN+++ D+ IAVA YEKTVQ AFREV+DAL+ RAT+AD A + AA + ++ Sbjct: 356 ANLNISKADRDIAVATYEKTVQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQ 415 Query: 428 SRYEAGYSSYLEYLDAQRSLFAIQQQSIQVQLAELQTRITLYKVLGGG 475 R +AG S L LDAQRSL+ QQ I +LA+ +TLYK LGGG Sbjct: 416 QRRDAGLDSALTLLDAQRSLYTAQQGLISARLAQATNLVTLYKTLGGG 463 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%) Query: 9 RTIAGISLISASLAACSLAPSYQQPAFPVAAHWQNDLQKAEPAGTQSDTRQAASIAWTDF 68 R+ +++ + L+ CSL P YQ+P PVAA + +A T + AA I W +F Sbjct: 3 RSFLSLAVAAVVLSGCSLIPDYQRPEAPVAAAYPQG--QAYGQNTGAAAVPAADIGWREF 60 Query: 69 FQDAQLKSVIAAALDHNRDLRMATLNIERARAMYNIQVADQVPNLALNGNGARQRLPADV 128 F+D QL+ +I AL++NRDLR+A LN+E RA Y IQ AD P + ++G+G RQRLP D+ Sbjct: 61 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDL 120 Query: 129 NPTGKAGVNSSYFAGVGLAAFEIDLFGRVRNLSEAALQRYLATEQAQRSAQISLIAEVAN 188 + TG ++S Y +G A+E+DLFGR+R+L + AL++YLATEQAQRSAQ +L+A VA Sbjct: 121 STTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVAT 180 Query: 189 TYEALVADRRLLQLTENTLASRADSYERQKQLYAEGASSEYDLRQAESLFEAAKAARAQQ 248 Y L AD+ LQLT++TL + S++ ++ Y G +S DLRQA++ E A+A AQ Sbjct: 181 AYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQY 240 Query: 249 ERRKTLDENALTVLVGHPLAADIGTANATSAEQVLPDLPAGLPSDLLTARPDILQQEAVL 308 R D+NAL +L+G + A++ + +L ++PAGLPSDLL RPDIL+ E L Sbjct: 241 TRLVAQDQNALVLLLGSGIPANLPQGLGLD-QTLLTEVPAGLPSDLLQRRPDILEAEHQL 299 Query: 309 RSQNANIGAARAAFFPRISLTGNFGSASSQLSGLFDSGSRSWSFIPQISIPIFEGGRNIA 368 + NA+IGAARAAFFP ISLT N G+ S QLSGLFD+GS SW F P I++PIF G A Sbjct: 300 MAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRA 359 Query: 369 NLNVAETDKKIAVAQYEKTVQVAFREVADALAGRATLADEAGAVKAQEAAESARYGFARS 428 +L+ A+ K I VAQYEK +Q AF+EVAD LA R T ++ A + A Y A Sbjct: 360 SLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADK 419 Query: 429 RYEAGYSSYLEYLDAQRSLFAIQQQSIQVQLAELQTRITLYKVLGGGWK 477 RY G +YL LDAQRSLF QQQ I +L +L + + LYK LGGGW Sbjct: 420 RYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWN 468 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/460 (46%), Positives = 296/460 (64%), Gaps = 10/460 (2%) Query: 24 CSLAPSYQQPAFPVAAHWQNDLQKAEPAGTQSDTRQA---ASIAWTDFFQDAQLKSVIAA 80 C+L P+YQQPA A ++ G TR A A I W D F D L+ VI Sbjct: 18 CTLMPTYQQPA---APVPAAFAGASDDRGDTDGTRAATPVAEIGWRDVFTDPSLQRVIDL 74 Query: 81 ALDHNRDLRMATLNIERARAMYNIQVADQVPNLALNGNGARQRLPADVNPTGKAGVNSSY 140 AL +NRDLR+A LN+E+ARA Y +Q A P + +G+ + R PA ++ TG+ V+ +Y Sbjct: 75 ALANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESASRTPAALSATGQPVVSHTY 134 Query: 141 FAGVGLAAFEIDLFGRVRNLSEAALQRYLATEQAQRSAQISLIAEVANTYEALVADRRLL 200 A +G +A+E+DLFGRVR+LS AL++YLAT +A+RS+QISL+AEVA Y L AD+ LL Sbjct: 135 SATLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQISLVAEVATAYLTLAADQDLL 194 Query: 201 QLTENTLASRADSYERQKQLYAEGASSEYDLRQAESLFEAAKAARAQQERRKTLDENALT 260 +L ++TL+S++D+Y ++ Y G +S LRQ+++ +AA+ + + D NAL Sbjct: 195 KLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAARVDVERYTAQVAQDRNALV 254 Query: 261 VLVGHPLAADIGTAN----ATSAEQVLPDLPAGLPSDLLTARPDILQQEAVLRSQNANIG 316 +LVG + A++ + + ++ VL +P GL SDLL RPDILQ E L++ NANIG Sbjct: 255 LLVGADVPAELLPRSLPDPSAASGSVLATIPPGLASDLLQRRPDILQAEHDLKAANANIG 314 Query: 317 AARAAFFPRISLTGNFGSASSQLSGLFDSGSRSWSFIPQISIPIFEGGRNIANLNVAETD 376 AARAAFFP ISLT + G++S+ L+GLF GS WSF PQIS+PIF+GG N ANL++A Sbjct: 315 AARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQISLPIFDGGANRANLDIANAS 374 Query: 377 KKIAVAQYEKTVQVAFREVADALAGRATLADEAGAVKAQEAAESARYGFARSRYEAGYSS 436 + IA+AQYEK +Q AFREV+DALA R TL + A ++ A S Y A +R++ G S Sbjct: 375 RDIALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQSLVDATSDSYQLATARFKRGVDS 434 Query: 437 YLEYLDAQRSLFAIQQQSIQVQLAELQTRITLYKVLGGGW 476 YL LD+QRSL+ QQ I +L+ L T YK LGGGW Sbjct: 435 YLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGW 474 >STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2 Length = 503 Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/485 (43%), Positives = 298/485 (61%), Gaps = 16/485 (3%) Query: 1 MTITFQSLR---TIAGISLISASLAACSLAPSYQQPAFPVAAHWQNDLQKAEPAGTQSDT 57 M ITF R T+A ++ ++ +LA C++AP +++PA P A + T S Sbjct: 19 MKITFTGYRQTATLATLAFVT-TLAGCTMAPKHERPASPTAMVY------PYATSTVSGA 71 Query: 58 RQAASIAWTDFFQDAQLKSVIAAALDHNRDLRMATLNIERARAMYNIQVADQVPNLALNG 117 AA I W DFF D L+ +IA AL +NRDLR A LN+E ARA+Y IQ A+ +P L + Sbjct: 72 PDAADIGWRDFFHDPLLQELIAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIAT 131 Query: 118 NGARQRLPADVNPTGKAGVNSSYFAGVGLAAFEIDLFGRVRNLSEAALQRYLATEQAQRS 177 R PAD++ ++ +N Y A A+E+DL+GRVR+LS+ AL Y+A ++ + Sbjct: 132 AMDASRTPADLSVMDESEINRRYEAAGATTAWELDLWGRVRSLSDQALAAYMALDETYIA 191 Query: 178 AQISLIAEVANTYEALVADRRLLQLTENTLASRADSYERQKQLYAEGASSEYDLRQAESL 237 A++SL++EVA+ + L ADR LL+LTE+TLA++ SY QL G +++ DLR AE Sbjct: 192 ARMSLVSEVASAWLTLRADRELLRLTEDTLAAQKSSYTLTTQLARTGNATQLDLRMAEIA 251 Query: 238 FEAAKAARAQQERRKTLDENALTVLVGHPLAADIG---TANATSAEQVLPD-LPAGLPSD 293 +A+ RA R+ D NAL +L+G PL ++ T E +P LP GLPSD Sbjct: 252 LRSAEINRAAYTRQLARDRNALELLLGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSD 311 Query: 294 LLTARPDILQQEAVLRSQNANIGAARAAFFPRISLTGNFGSASSQLSGLFDSGSRSWSFI 353 LL RPDI E LR NA IGAARAAFFP ISLTG+ G+AS+ LSGLF+ GS SW F+ Sbjct: 312 LLVRRPDIRAAEYRLRGANARIGAARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFL 371 Query: 354 PQISIPIFEGGRNIANLNVAETDKKIAVAQYEKTVQVAFREVADALAGRATLADEAGAV- 412 PQI++P+F GG A+L+ A K+I +A+YE +Q AFR+VAD LAG+ TL D+ + Sbjct: 372 PQITLPLFHGGALRADLDRAHVQKQIEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQ 431 Query: 413 KAQEAAESARYGFARSRYEAGYSSYLEYLDAQRSLFAIQQQSIQVQLAELQTRITLYKVL 472 +A EA++ A Y A R++ G YL LD R L+ QQ+ ++ +L + I LYK L Sbjct: 432 RAVEASQIA-YELAGLRFQEGVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKAL 490 Query: 473 GGGWK 477 GGGW+ Sbjct: 491 GGGWR 495 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/482 (42%), Positives = 291/482 (60%), Gaps = 11/482 (2%) Query: 3 ITFQSLRTIAGISLISASLAACSLAPSYQQPAFPVAAHWQNDLQKAEPAGTQSDTRQ--- 59 +TF+ + + L + L+ CSLAP Y++ A PVA + Q G +DT + Sbjct: 5 MTFRLPALLPALLLAAGVLSGCSLAPRYERLAAPVAGDYP---QAPAGYGVSADTAKPGE 61 Query: 60 ----AASIAWTDFFQDAQLKSVIAAALDHNRDLRMATLNIERARAMYNIQVADQVPNLAL 115 A + W +FF D +L+ +I +L++NRDLR+A LNIE ARA Y Q+AD +P + Sbjct: 62 TAPRATDLGWREFFPDPRLQRLIGLSLENNRDLRVAILNIEAARAQYRQQIADLLPPINA 121 Query: 116 NGNGARQRLPADVNPTGKAGVNSSYFAGVGLAAFEIDLFGRVRNLSEAALQRYLATEQAQ 175 R P ++ TG+ Y GVG++ ++++LF V +++ +A YLATE+ Q Sbjct: 122 TATYTRSLTPQSISQTGQDINTKQYQLGVGISNYQVNLFS-VGDVTSSARASYLATEEGQ 180 Query: 176 RSAQISLIAEVANTYEALVADRRLLQLTENTLASRADSYERQKQLYAEGASSEYDLRQAE 235 R+ QISLI++VA Y A L+L + TL R D Y+ KQ + GASS DLRQ E Sbjct: 181 RATQISLISQVAKAYLNERAYAEQLELAQQTLKGREDYYKLAKQRFDVGASSALDLRQNE 240 Query: 236 SLFEAAKAARAQQERRKTLDENALTVLVGHPLAADIGTANATSAEQVLPDLPAGLPSDLL 295 +L E+A+ + AQ R+ NAL +LVG PL AD+ S+E+++ D+P GLPS+LL Sbjct: 241 TLVESARVSVAQLTRQYAQATNALVLLVGSPLPADLPPPTTVSSEKIVADIPPGLPSELL 300 Query: 296 TARPDILQQEAVLRSQNANIGAARAAFFPRISLTGNFGSASSQLSGLFDSGSRSWSFIPQ 355 RPDI Q E L + NANIG ARAAFFP + LT N G+AS+ L LF SG+ WSF+P Sbjct: 301 EQRPDIRQAEQKLVAANANIGVARAAFFPSLGLTSNVGTASTALHDLFKSGTGLWSFVPN 360 Query: 356 ISIPIFEGGRNIANLNVAETDKKIAVAQYEKTVQVAFREVADALAGRATLADEAGAVKAQ 415 +++PIF G N+ NL++ + ++KIAVA YEKT+Q AF+EV+DAL R TL ++ A K Sbjct: 361 LTLPIFNWGTNVFNLDLTKANQKIAVANYEKTIQTAFQEVSDALVARGTLDEQVAAQKRF 420 Query: 416 EAAESARYGFARSRYEAGYSSYLEYLDAQRSLFAIQQQSIQVQLAELQTRITLYKVLGGG 475 A + R + RY G SS+L+ LDAQR LF+ Q +Q +LA L + LY LGGG Sbjct: 421 RDATAERLTLSDQRYRNGVSSFLDVLDAQRDLFSADQTLVQTRLARLTNAVDLYTALGGG 480 Query: 476 WK 477 + Sbjct: 481 LQ 482