BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0004.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0062 [M] COG0768 Cell division protein FtsI/penicillin-bindin...   226   1e-59
VC0950 [M] COG0768 Cell division protein FtsI/penicillin-binding...   124   8e-29
mrdA [M] COG0768 Cell division protein FtsI/penicillin-binding p...   116   2e-26
ZmrdA [M] COG0768 Cell division protein FtsI/penicillin-binding ...   116   2e-26
ECs0673 [M] COG0768 Cell division protein FtsI/penicillin-bindin...   116   2e-26

>RSc0062 [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
           Rso Ralstonia solanacearum
          Length = 801

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 99/146 (67%), Positives = 131/146 (89%)

Query: 1   LRLFAVAVLVLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVV 60
           +RL A A+ VLVCF LL+ RF WLQ V+H+ Y+A+AE+NRISV PI PNRG+I+DRNGVV
Sbjct: 16  VRLAAAALFVLVCFGLLLVRFFWLQSVKHEQYSAKAEDNRISVAPIEPNRGIIMDRNGVV 75

Query: 61  LARNYSAYTLEITPSKIAGSLDDLVDQLSSLVDIQPKDRRRFRKLLEESKNFESLPIRTR 120
           LARNYSAYTLE+TPSK+  +LD+ +DQL+ ++DIQP+DRRRF++L+E++++FESLPIR++
Sbjct: 76  LARNYSAYTLEVTPSKLQDTLDNTIDQLAQVIDIQPRDRRRFKRLMEDARSFESLPIRSQ 135

Query: 121 LTDEEVARFTAQRYRFPGVDIQARLF 146
           LTD+EVARF+AQR+RFPGVD+ ARLF
Sbjct: 136 LTDQEVARFSAQRFRFPGVDVHARLF 161


>VC0950 [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
           Vch Vibrio cholerae
          Length = 638

 Score =  124 bits (310), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 8   VLVLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVVLARNYSA 67
           V +L+C  LL+     +QI ++  Y  ++ +NRI VVPI PNRGLI DRNGV+LA N   
Sbjct: 27  VGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLIFDRNGVLLAENRPV 86

Query: 68  YTLEITPSKIAGSLDDLVDQLSSLVDIQPKDRRRFRKLLEESKNFESLPIRTRLTDEEVA 127
           + LE+ P K+  ++++ + +L  L++I P+    F K  ++++ F S+P+ T+LTD+EVA
Sbjct: 87  FNLEVIPEKVP-NMEETIARLQQLIEISPEKLAAFEKERKQTRRFNSVPLLTQLTDDEVA 145

Query: 128 RFTAQRYRFPGVDIQARL 145
           +F+  +++FPGV + A L
Sbjct: 146 KFSVNQHKFPGVSVTANL 163


>mrdA [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
           Eco Escherichia coli K12
          Length = 633

 Score =  116 bits (291), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%)

Query: 10  VLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVVLARNYSAYT 69
           +L+   +L+A    LQIVR   Y  ++ ENRI +VPI P+RG+I DRNG+ LA N + Y 
Sbjct: 28  ILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQ 87

Query: 70  LEITPSKIAGSLDDLVDQLSSLVDIQPKDRRRFRKLLEESKNFESLPIRTRLTDEEVARF 129
           +E+ P K+  ++   +D L S+VD+   D   FRK    S  F S+P++T LT+ +VARF
Sbjct: 88  IEMMPEKV-DNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARF 146

Query: 130 TAQRYRFPGVDIQA 143
              +YRFPGV+++ 
Sbjct: 147 AVNQYRFPGVEVKG 160


>ZmrdA [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
           EcZ Escherichia coli O157:H7 EDL933
          Length = 633

 Score =  116 bits (291), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%)

Query: 10  VLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVVLARNYSAYT 69
           +L+   +L+A    LQIVR   Y  ++ ENRI +VPI P+RG+I DRNG+ LA N + Y 
Sbjct: 28  ILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQ 87

Query: 70  LEITPSKIAGSLDDLVDQLSSLVDIQPKDRRRFRKLLEESKNFESLPIRTRLTDEEVARF 129
           +E+ P K+  ++   +D L S+VD+   D   FRK    S  F S+P++T LT+ +VARF
Sbjct: 88  IEMMPEKV-DNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARF 146

Query: 130 TAQRYRFPGVDIQA 143
              +YRFPGV+++ 
Sbjct: 147 AVNQYRFPGVEVKG 160


>ECs0673 [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2
           Ecs Escherichia coli O157:H7
          Length = 633

 Score =  116 bits (291), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 1/134 (0%)

Query: 10  VLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVVLARNYSAYT 69
           +L+   +L+A    LQIVR   Y  ++ ENRI +VPI P+RG+I DRNG+ LA N + Y 
Sbjct: 28  ILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQ 87

Query: 70  LEITPSKIAGSLDDLVDQLSSLVDIQPKDRRRFRKLLEESKNFESLPIRTRLTDEEVARF 129
           +E+ P K+  ++   +D L S+VD+   D   FRK    S  F S+P++T LT+ +VARF
Sbjct: 88  IEMMPEKV-DNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARF 146

Query: 130 TAQRYRFPGVDIQA 143
              +YRFPGV+++ 
Sbjct: 147 AVNQYRFPGVEVKG 160