BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0003.p         (170 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0061 [M] COG2891 Cell shape-determining protein Rso Ralstonia...   179   3e-45
PA4479 [M] COG2891 Cell shape-determining protein Pae Pseudomona...    67   2e-11
XF1311 [M] COG2891 Cell shape-determining protein Xfa Xylella fa...    64   1e-10

>RSc0061 [M] COG2891 Cell shape-determining protein Rso Ralstonia
           solanacearum
          Length = 170

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 126/170 (74%)

Query: 1   MNDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISI 60
           MN P Y+L P NP FIA S V AFL NL+PWG    +PD VALVLVFW IH+PR++G+ +
Sbjct: 1   MNSPQYLLRPVNPGFIAFSFVVAFLFNLMPWGHLQWIPDLVALVLVFWNIHQPRRVGMVV 60

Query: 61  AFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQ 120
           AF++GLLMDV+EA LLGE+A+AYTLLSYF+I IHRRVLWF V +QALH+LPLLLL  AV 
Sbjct: 61  AFLLGLLMDVHEARLLGEHAMAYTLLSYFAITIHRRVLWFSVLSQALHVLPLLLLAHAVP 120

Query: 121 LLVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170
           +L+RL++    P W       + A LWPV   +LLAPQRR  + D+ RPI
Sbjct: 121 ILIRLLMGAHLPDWQVALPPLIEAALWPVANAILLAPQRRPESVDETRPI 170


>PA4479 [M] COG2891 Cell shape-determining protein Pae Pseudomonas
           aeruginosa
          Length = 164

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 66/114 (57%)

Query: 35  VGVPDFVALVLVFWAIHEPRKIGISIAFMMGLLMDVNEATLLGENALAYTLLSYFSIMIH 94
           +G P ++A++L +W +  P ++G+  A+++GL  DV    LLG+NAL   L+++  + +H
Sbjct: 35  IGRPLWLAMLLTYWVLLLPERVGMVTAWLLGLAQDVLYGNLLGQNALILGLITFLVLSLH 94

Query: 95  RRVLWFPVGTQALHILPLLLLTQAVQLLVRLIVSGKFPHWYYFSESFVCALLWP 148
           +R+  FP   Q L ++ +  L Q +QL +  +   + P   +   + V ALLWP
Sbjct: 95  QRLRMFPAWQQCLVLVVVYGLAQLLQLWLNALTGNRPPTLTFLLPALVSALLWP 148


>XF1311 [M] COG2891 Cell shape-determining protein Xfa Xylella fastidiosa
           9a5c
          Length = 161

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%)

Query: 38  PDFVALVLVFWAIHEPRKIGISIAFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRV 97
           P ++ALVL++W I  P ++GI  AF+MG+L D     LLGE AL   ++S+       R+
Sbjct: 34  PYWLALVLMYWVIETPGRVGIGFAFVMGVLADFLYGGLLGEQALRLVVMSFIVQRFRARL 93

Query: 98  LWFPVGTQALHILPLLLLTQAVQLLVRLIVSGKFPHWYYFSESFVCALLW 147
            +FP+  QAL I  LL     V   + L +      W Y+S   +  LLW
Sbjct: 94  RFFPMPQQALVIGGLLFNDCVVATALHLTLGEPLLSWSYWSAPLLGMLLW 143