BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0126.p         (54 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0146 [G] COG4213 ABC-type xylose transport system, periplas...    63   2e-10

>BMEII0146 [G] COG4213 ABC-type xylose transport system, periplasmic component
           Bme Brucella melitensis
          Length = 319

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 1   VHLARNEKPSYNSQYDNGFKKVDTVLLKPIPLTKANVNILIDDGFYTQAQIGAK 54
           V + R+EKP +N + +NG K VDT+LL P  +TK N++I I DGFYT+ QI  K
Sbjct: 266 VQMVRDEKPEFNGKINNGSKDVDTLLLTPTAVTKDNIDIYIKDGFYTKEQIEGK 319