BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0125.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1633 [G] COG4213 ABC-type xylose transport system, periplasmi... 315 8e-86 BMEII0146 [G] COG4213 ABC-type xylose transport system, periplas... 311 8e-85 xylF [G] COG4213 ABC-type xylose transport system, periplasmic c... 289 5e-78 ZxylF [G] COG4213 ABC-type xylose transport system, periplasmic ... 288 1e-77 ECs4449 [G] COG4213 ABC-type xylose transport system, periplasmi... 288 1e-77 >RSp1633 [G] COG4213 ABC-type xylose transport system, periplasmic component Rso Ralstonia solanacearum Length = 339 Score = 315 bits (807), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 159/238 (66%), Positives = 189/238 (79%), Gaps = 3/238 (1%) Query: 25 AMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVFVQSADASEARQISQIENLI 84 A A + P IGFSIDDLRVERW DRD+F AA+KLGA V VQSA+A+EA+QI+QIENL+ Sbjct: 26 AFASKEAPVIGFSIDDLRVERWTHDRDYFVDAAKKLGATVNVQSANANEAKQIAQIENLV 85 Query: 85 SRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAE 144 ++ VDV+VIVPFN+ VL N I AKK GIKV+SYDRLILNADVD Y+SFDNEKVGEMQA+ Sbjct: 86 AQNVDVLVIVPFNSKVLGNAIASAKKKGIKVVSYDRLILNADVDGYVSFDNEKVGEMQAQ 145 Query: 145 GVIKAQSKGNFYLLGGSPTDNNAKMLREGQMKVLKPLIDKGDIKIVGQQWVKDWNPTEAL 204 GV+K KGN++LLGG+ TDNNA++LR+GQMKVLKPL+DKGDIKIVGQQW +W+P++A Sbjct: 146 GVVKLAPKGNYFLLGGASTDNNARLLRDGQMKVLKPLVDKGDIKIVGQQWTPEWDPSKAQ 205 Query: 205 SIVENALTANNNKIDAIVASNDGTAGRHPGTGGAKAGRQGTGIGPGRRPRGDQARCRR 262 SIVENALTAN+N I IVASNDGTAG G A AG++ G P D A RR Sbjct: 206 SIVENALTANSNNIQGIVASNDGTAG---GAIQALAGQKLAGKVPVSGQDADLAGVRR 260 >BMEII0146 [G] COG4213 ABC-type xylose transport system, periplasmic component Bme Brucella melitensis Length = 319 Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 175/206 (84%) Query: 25 AMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVFVQSADASEARQISQIENLI 84 A A ++P IGFSIDDLRVERWARDRD+F AAAEKLGAKV VQSAD +E +Q+ Q+ENLI Sbjct: 6 AFASPEHPVIGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQVENLI 65 Query: 85 SRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAE 144 S+GVD IVIVP N+ V + +AK +GIKVLSYDRLILNAD+DAYISFDNE+VG MQA+ Sbjct: 66 SQGVDAIVIVPMNSKVFDAVVADAKASGIKVLSYDRLILNADIDAYISFDNERVGFMQAQ 125 Query: 145 GVIKAQSKGNFYLLGGSPTDNNAKMLREGQMKVLKPLIDKGDIKIVGQQWVKDWNPTEAL 204 V+KA+ +GN+YLLGGSPTDNNAK+LR GQ K LK +D G +KIVG QWVK+W+PTEAL Sbjct: 126 AVLKAKPEGNYYLLGGSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKEWSPTEAL 185 Query: 205 SIVENALTANNNKIDAIVASNDGTAG 230 SI+ENALTA NKIDA+VASNDGTAG Sbjct: 186 SIMENALTATQNKIDAVVASNDGTAG 211 >xylF [G] COG4213 ABC-type xylose transport system, periplasmic component Eco Escherichia coli K12 Length = 330 Score = 289 bits (740), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 135/204 (66%), Positives = 166/204 (81%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVFVQSADASEARQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKVFVQSA+ +E Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGV 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 IKAQSKGNFYLLGGSPTDNNAKMLREGQMKVLKPLIDKGDIKIVGQQWVKDWNPTEALSI 206 + +GN++L+GGSP DNNAK+ R GQMKVLKP +D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAG 230 +ENALTANNNKIDA+VASND TAG Sbjct: 201 MENALTANNNKIDAVVASNDATAG 224 >ZxylF [G] COG4213 ABC-type xylose transport system, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 330 Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 134/204 (65%), Positives = 166/204 (81%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVFVQSADASEARQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKVFVQSA+ +E Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGV 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 IKAQSKGNFYLLGGSPTDNNAKMLREGQMKVLKPLIDKGDIKIVGQQWVKDWNPTEALSI 206 + +GN++L+GGSP DNNAK+ R GQMKVL+P +D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLQPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAG 230 +ENALTANNNKIDA+VASND TAG Sbjct: 201 MENALTANNNKIDAVVASNDATAG 224 >ECs4449 [G] COG4213 ABC-type xylose transport system, periplasmic component Ecs Escherichia coli O157:H7 Length = 330 Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 134/204 (65%), Positives = 166/204 (81%) Query: 27 ADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKLGAKVFVQSADASEARQISQIENLISR 86 A AK KIG +IDDLR+ERW +DRD F AE LGAKVFVQSA+ +E Q+SQIEN+I+R Sbjct: 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80 Query: 87 GVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDRLILNADVDAYISFDNEKVGEMQAEGV 146 GVDV+VI+P+N VL+N +KEAK+ GIKVL+YDR+I +AD+D YISFDNEKVGE+QA+ + Sbjct: 81 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKAL 140 Query: 147 IKAQSKGNFYLLGGSPTDNNAKMLREGQMKVLKPLIDKGDIKIVGQQWVKDWNPTEALSI 206 + +GN++L+GGSP DNNAK+ R GQMKVL+P +D G IK+VG QWV W P AL I Sbjct: 141 VDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLQPYVDSGKIKVVGDQWVDGWLPENALKI 200 Query: 207 VENALTANNNKIDAIVASNDGTAG 230 +ENALTANNNKIDA+VASND TAG Sbjct: 201 MENALTANNNKIDAVVASNDATAG 224