BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0124.p (414 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO4034_1 [K] COG1609 Transcriptional regulators Ype Yersinia pe... 271 3e-72 ECs4452_1 [K] COG1609 Transcriptional regulators Ecs Escherichia... 257 4e-68 ZxylR_1 [K] COG1609 Transcriptional regulators EcZ Escherichia c... 257 4e-68 xylR_1 [K] COG1609 Transcriptional regulators Eco Escherichia co... 257 4e-68 HI1106_1 [K] COG1609 Transcriptional regulators Hin Haemophilus ... 243 9e-64 >YPO4034_1 [K] COG1609 Transcriptional regulators Ype Yersinia pestis Length = 265 Score = 271 bits (692), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/259 (50%), Positives = 175/259 (67%), Gaps = 1/259 (0%) Query: 8 HRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIADFD 67 +RI LLFN NK++DR ++ G+GEYL +++ +WD+++EEDFRCR I+ W G G+IADFD Sbjct: 6 YRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGVIADFD 65 Query: 68 DPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNFAC 127 D +++ L+ V +P+V VGGSY YP + Y+ATDN LV A+ HL E GL FA Sbjct: 66 DRQIEQLLANVNVPIVGVGGSYHQSEDYPS-VDYIATDNKALVNAAFMHLKEKGLNRFAF 124 Query: 128 FSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLPKP 187 + LP + RWAQERE AF L + QG VY+G+ T+ +W A + WV++LP Sbjct: 125 YGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGMATAPDNWQYAQNRLADWVQTLPHQ 184 Query: 188 IGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEMGR 247 GIIAVTDARAR LLQ C IAVPE++++IGIDN+ L R L+RV LSSV+QGT +MG Sbjct: 185 TGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTRQMGY 244 Query: 248 TAAHLLHQMLHGHGAQFSD 266 AA LLHQ L Q +D Sbjct: 245 RAAKLLHQRLKLRQKQQTD 263 >ECs4452_1 [K] COG1609 Transcriptional regulators Ecs Escherichia coli O157:H7 Length = 265 Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 171/250 (68%), Gaps = 1/250 (0%) Query: 8 HRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIADFD 67 HRI LLFN NK +DR ++ G+GEYL ++++ WD+++EEDFR R I+ W G G+IADFD Sbjct: 6 HRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD 65 Query: 68 DPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNFAC 127 D +++AL+ V +P+V VGGSY YP + Y+ATDN+ LV+ A+ HL E G+ FA Sbjct: 66 DKQIEQALADVDVPIVGVGGSYHLAESYPP-VHYIATDNYALVESAFLHLKEKGVNRFAF 124 Query: 128 FSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLPKP 187 + LP++ RWA ERE AF L + +G VY+G+ T+ ++W A + W+++LP Sbjct: 125 YGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQ 184 Query: 188 IGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEMGR 247 GIIAVTDARAR +LQ C I VPE++ +IGIDN+ L R L+RV LSSV QG +MG Sbjct: 185 TGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGY 244 Query: 248 TAAHLLHQML 257 AA LLH++L Sbjct: 245 QAAKLLHRLL 254 >ZxylR_1 [K] COG1609 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 265 Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 171/250 (68%), Gaps = 1/250 (0%) Query: 8 HRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIADFD 67 HRI LLFN NK +DR ++ G+GEYL ++++ WD+++EEDFR R I+ W G G+IADFD Sbjct: 6 HRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD 65 Query: 68 DPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNFAC 127 D +++AL+ V +P+V VGGSY YP + Y+ATDN+ LV+ A+ HL E G+ FA Sbjct: 66 DKQIEQALADVDVPIVGVGGSYHLAESYPP-VHYIATDNYALVESAFLHLKEKGVNRFAF 124 Query: 128 FSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLPKP 187 + LP++ RWA ERE AF L + +G VY+G+ T+ ++W A + W+++LP Sbjct: 125 YGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQ 184 Query: 188 IGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEMGR 247 GIIAVTDARAR +LQ C I VPE++ +IGIDN+ L R L+RV LSSV QG +MG Sbjct: 185 TGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGY 244 Query: 248 TAAHLLHQML 257 AA LLH++L Sbjct: 245 QAAKLLHRLL 254 >xylR_1 [K] COG1609 Transcriptional regulators Eco Escherichia coli K12 Length = 265 Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 171/250 (68%), Gaps = 1/250 (0%) Query: 8 HRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIADFD 67 HRI LLFN NK +DR ++ G+GEYL ++++ WD+++EEDFR R I+ W G G+IADFD Sbjct: 6 HRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD 65 Query: 68 DPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNFAC 127 D +++AL+ V +P+V VGGSY YP + Y+ATDN+ LV+ A+ HL E G+ FA Sbjct: 66 DKQIEQALADVDVPIVGVGGSYHLAESYPP-VHYIATDNYALVESAFLHLKEKGVNRFAF 124 Query: 128 FSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLPKP 187 + LP++ RWA ERE AF L + +G VY+G+ T+ ++W A + W+++LP Sbjct: 125 YGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQ 184 Query: 188 IGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEMGR 247 GIIAVTDARAR +LQ C I VPE++ +IGIDN+ L R L+RV LSSV QG +MG Sbjct: 185 TGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGY 244 Query: 248 TAAHLLHQML 257 AA LLH++L Sbjct: 245 QAAKLLHRLL 254 >HI1106_1 [K] COG1609 Transcriptional regulators Hin Haemophilus influenzae Length = 265 Score = 243 bits (619), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 117/252 (46%), Positives = 165/252 (65%), Gaps = 1/252 (0%) Query: 8 HRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIADFD 67 ++IALLFN NK++DR ++ GIG+Y+ +++ WD+++E++F I + GIIADFD Sbjct: 6 YKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFD 65 Query: 68 DPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNFAC 127 DP E L +P +AVGGSY YP PY+ATDN LV++A HL E GL FA Sbjct: 66 DPKTVELLQHTLIPTIAVGGSYKQADFYPH-FPYIATDNMALVEMALSHLQEKGLSQFAF 124 Query: 128 FSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLPKP 187 + L W+ ER AF L +++ ++Y GV AQ+W ++ I W++SLP Sbjct: 125 YGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQVHAQNWLEEQQKLIVWLKSLPSH 184 Query: 188 IGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEMGR 247 GIIAVTDARAR LLQAC ++ IAVPE++ ++GIDN+ L + L+R+ LSSV QGT E+G Sbjct: 185 TGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTREIGY 244 Query: 248 TAAHLLHQMLHG 259 AA LLH++L+G Sbjct: 245 QAAKLLHKLLNG 256