BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0094.p (541 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 381 e-105 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 311 2e-84 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 303 7e-82 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 299 1e-80 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 298 2e-80 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/517 (43%), Positives = 330/517 (63%), Gaps = 16/517 (3%) Query: 3 KLSHLNIGQRLGLGFGVVILLMLGLTVIGVYRLNQINGNIRSIANDFYPRTVMANTVKGA 62 ++S + IG RLG F +V+ L++G+ +G+ RL+ N + I ++ Y ++N +K Sbjct: 2 RISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNN 61 Query: 63 LDETARSMRNLLFMSTVDE---IKGELNAITRAGAVIDETLKRFARDTPSAEGKRMLDAV 119 + + NLL ++T ++ + AI +A A + R + + +GK + Sbjct: 62 GYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANA---QAYGRLEKLLTTDQGKALFKEQ 118 Query: 120 NAARAQYTPVLDNFLAAVKDGQVEQARDLILPEIAPYQAAYFKALDNLIAFQGRGMEQAG 179 AR+ Y + F A V V++AR L +++ Q Y+ +D ++ Q ME Sbjct: 119 FDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDV 178 Query: 180 QEAERVSGAASVLMIAMATIASLLAVLVGYSVMRSITRPLNAAINIAERVAGGDLSVRVE 239 EA A + MI +A +A+LLA+ G + R+ITRP+N A+++AE VA G+L+ +E Sbjct: 179 SEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLE 238 Query: 240 NSAHDETGKLLTALQGMRDGLLNAVTQVRDGSDAISVAAREIAAGNANLSARTELQASTL 299 DE G+LL AL+ M + L V+QVR G+D I+ A+ E+A+GN +LS+RTE QAS+L Sbjct: 239 VDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSL 298 Query: 300 EETASSM----------LXNARQANQLVMNASQVATQGGDVVTQVVNTMREIKDSSRQIV 349 EETA++M NA++A++L NAS VAT+GGD V + + TM I SSR+IV Sbjct: 299 EETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIV 358 Query: 350 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQ 409 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA+AAKEI LI+ Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIE 418 Query: 410 NSVKKVDAGSTLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDD 469 +SV V G+ V++AG ++D+V +++V +I++EISA+S EQS GI Q+N+AI Q+D Sbjct: 419 DSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDK 478 Query: 470 MTQQNSALVEQAAAAAQSMHDQSMALGRAVSIFKIEA 506 TQ+N++LVE++A AAQ++ DQ+ L VS FK+ A Sbjct: 479 ATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 311 bits (798), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 179/343 (52%), Positives = 232/343 (67%), Gaps = 16/343 (4%) Query: 209 YSVMRSITRPLNAAINIAERVAGGDLSVRVENSAHDETGKLLTALQGMRDGLLNAVTQVR 268 + + R IT PL A +++AER+A GDL+ +S DE G L+ A+ M + L + ++R Sbjct: 306 WRMTRQITVPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIR 365 Query: 269 DGSDAISVAAREIAAGNANLSARTELQASTLEETASSM----------LXNARQANQLVM 318 G +S A+ EIAAGN +LS+RTE QA+ +EETA+SM NA ANQL Sbjct: 366 IGVSQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLAT 425 Query: 319 NASQVATQGGDVVTQVVNTMREIKDSSRQIVEIISVIDGIAFQTNILALNAAVEAARAGE 378 ASQ A QGG +V VV TM +I SS++I EI SVI+ IAFQTNILALNAAVEAARAGE Sbjct: 426 EASQTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGE 485 Query: 379 QGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAGSTLVDQAGNTMQDIVRSVKH 438 QGRGFAVVA+EVR LAQRSA AAKEI GLI SV +V+AG++LV AGNTM++IVRSV H Sbjct: 486 QGRGFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSH 545 Query: 439 VADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQQNSALVEQAAAAAQSMHDQSMALGRA 498 V DIM EI++ASDEQS GI QV+ AI ++D TQQN+ALVE++AAAA S+ +Q++ L +A Sbjct: 546 VRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQA 605 Query: 499 VSIFKIEA------PGDIQTIGIGGSHAEPAPARISYQEPAPC 535 V++F++ G + T P RI+ Q+ Sbjct: 606 VAVFRLSEDEGATDEGRVVTPKASNGRHTPEDHRINQQKSWET 648 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 303 bits (776), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 216/434 (49%), Positives = 280/434 (64%), Gaps = 25/434 (5%) Query: 97 DETLKRFARDTPSAEGKRML-DAVNAARAQYTPVLDN---FLAAVKDGQVEQARDLILPE 152 D + KR+ R PS +R L D +A R + + D + A++ G E+ ++ E Sbjct: 95 DASWKRY-RALPSTPDERKLADEADALRTVF--LRDGAQALMQAIQAGDAERTSQTVM-E 150 Query: 153 IAPYQAAYFKAL-DNLIAFQGRGME--QAGQEA-ERVSGAASVLMIAMATIASLLAVLVG 208 P A ++ L D + A ME +A EA +R S L A+ + + L+ Sbjct: 151 AMP---ALYRPLGDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVGGGLLT 207 Query: 209 YSVMRSITRPLNAAINIAERVAGGDLSVRVENSAHDETGKLLTALQGMRDGLLNAVTQVR 268 +S+ RSIT PLN AI AE + GDL+ + DETG++L ALQ M++ L V QVR Sbjct: 208 WSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVR 267 Query: 269 DGSDAISVAAREIAAGNANLSARTELQASTLEETASSM----------LXNARQANQLVM 318 GSDAI+ A ++IAAGNA+LS RTE QAS+LEETASSM +ARQA+ L + Sbjct: 268 TGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAV 327 Query: 319 NASQVATQGGDVVTQVVNTMREIKDSSRQIVEIISVIDGIAFQTNILALNAAVEAARAGE 378 NAS +A +GG+VV +VV TM I DSSR+I +II VI+GIAFQTNILALNAAVEAARAGE Sbjct: 328 NASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGE 387 Query: 379 QGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAGSTLVDQAGNTMQDIVRSVKH 438 QGRGFAVVA EVR LAQRSA AAKEI LI +SV +V++G+TLV +AG + ++V +VK Sbjct: 388 QGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKR 447 Query: 439 VADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQQNSALVEQAAAAAQSMHDQSMALGRA 498 V IM EISAASD QS GI QVN A+ Q+D+ TQQN+ALVEQAAAAA S+ +Q+ L Sbjct: 448 VTGIMGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGT 507 Query: 499 VSIFKIEAPGDIQT 512 V+ F+ A QT Sbjct: 508 VAAFRTRADAPAQT 521 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 299 bits (765), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 236/323 (73%), Gaps = 10/323 (3%) Query: 192 LMIAMATIASLLAVLVGYSVMRSITRPLNAAINIAERVAGGDLSVRVENSAHDETGKLLT 251 L+IA +A +++ + ++R+I PLNA + +R+A GDL+ V DE G LL Sbjct: 190 LVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGDLTQPVRIDRRDEMGHLLE 249 Query: 252 ALQGMRDGLLNAVTQVRDGSDAISVAAREIAAGNANLSARTELQASTLEETASSM----- 306 L M+ L + V +VR GS++I A ++IAAGNA+LS RTE QAS+LEETASSM Sbjct: 250 GLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTEGQASSLEETASSMEEMTS 309 Query: 307 -----LXNARQANQLVMNASQVATQGGDVVTQVVNTMREIKDSSRQIVEIISVIDGIAFQ 361 NARQA+QL +AS VA+QGG VVT VV TMREI SSR + EII VIDGIAFQ Sbjct: 310 IVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREISASSRTVSEIIGVIDGIAFQ 369 Query: 362 TNILALNAAVEAARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAGSTL 421 TNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA+AAKEI +I+ S+ KVD GS L Sbjct: 370 TNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKEMIEASLAKVDTGSKL 429 Query: 422 VDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQQNSALVEQA 481 +QAG+TM++IV S++ V DIM EI+AAS EQS+GI QVN A+ +D+ TQQN+ALVEQA Sbjct: 430 AEQAGSTMENIVTSIRRVTDIMGEIAAASSEQSSGIEQVNKAVTLMDEATQQNAALVEQA 489 Query: 482 AAAAQSMHDQSMALGRAVSIFKI 504 AAAA+S+ +Q+ AL A++ F++ Sbjct: 490 AAAAESLEEQAQALNEAIAAFRL 512 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 298 bits (763), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 227/480 (47%), Positives = 305/480 (63%), Gaps = 30/480 (6%) Query: 52 RTVMANTVKGALDETARSMRNLLF----MSTVDEIKG--ELNAITR-AGAVIDETLKRFA 104 R V KG LD A+ NLL+ ++ D + EL + + A A++D +A Sbjct: 45 RAVYLEDAKG-LDLLAKDTANLLWARIHLTNFDSVSSPEELAKLLKDAHAMVDAANAAWA 103 Query: 105 RDT----PSAEGKRMLDAVNAARAQYTPV-LDNFLAAVKDGQVEQARDLILPEIAPYQAA 159 T P A+ + L A +AARA++ L+ + A++ + RDL ++ A Sbjct: 104 AFTQLPIPDAD-RAQLQAADAARARFVKTALEPAITALERSDLTTYRDLNTTQVPQLFAV 162 Query: 160 YFKALDNLIAFQGRGMEQAGQEAERVSGAASVLMIAMATIASLLAVLVGYSVM-RSITRP 218 Y AL L+ + QA + + AASV + +A+L+ +V V+ R++ RP Sbjct: 163 YDAALQPLVKARF-AYGQARFDRSQSRYAASVWLSGGLLLAALVLSVVARGVLGRTLVRP 221 Query: 219 LNAAINIAERVAGGDLSVRVENSAH----DETGKLLTALQGMRDGLLNAVTQVRDGSDAI 274 L AI++ ER+A GDL+ R++ DET +L+ A+ M+ L V QVR GSD+I Sbjct: 222 LERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVGQVRTGSDSI 281 Query: 275 SVAAREIAAGNANLSARTELQASTLEETASSM----------LXNARQANQLVMNASQVA 324 + A ++IAAGNA+LS RTE QAS+LEETASSM NARQA+ L +NAS VA Sbjct: 282 ASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDVA 341 Query: 325 TQGGDVVTQVVNTMREIKDSSRQIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 384 +GG+VV +VV TM I SS++I +II VI+GIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 342 VKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFA 401 Query: 385 VVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAGSTLVDQAGNTMQDIVRSVKHVADIMT 444 VVA EVR LAQRSA AAKEI LI +SV +V GS LV +AG + ++V +VK V DIM Sbjct: 402 VVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVAVKRVTDIMG 461 Query: 445 EISAASDEQSAGIRQVNDAIEQIDDMTQQNSALVEQAAAAAQSMHDQSMALGRAVSIFKI 504 EISAASDEQS+GI QVN A+ Q+D++TQQN+ALVEQAAAAA+S+ Q+ AL +AVS F++ Sbjct: 462 EISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEQAAAAAESLEAQAEALRQAVSAFRV 521