BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0093.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1721 [K] COG5631 Predicted transcription regulator, contains ...    77   1e-14
BMEII0603 [K] COG5631 Predicted transcription regulator, contain...    60   1e-09

>RSc1721 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Rso Ralstonia solanacearum
          Length = 188

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +V YSLKKL +L LV   + GKEV Y+T   G+  C RY +IREQ L S ++    E+ E
Sbjct: 104 LVTYSLKKLQALELVEGTRNGKEVTYTTTATGETACARYREIREQCLTSNISPGGEENAE 163

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           + ELAR +R+L+GLYEQAARSATS+
Sbjct: 164 IGELARLMRVLTGLYEQAARSATSL 188


>BMEII0603 [K] COG5631 Predicted transcription regulator, contains HTH domain
           (MarR family) Bme Brucella melitensis
          Length = 199

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +  Y+++KL   GL+ T K  KE        G + C  Y  IRE+LLV            
Sbjct: 115 IATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVDSTANARPSEET 174

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           L ELA  LR +SG + QA RSA ++
Sbjct: 175 LSELAALLRFMSGAFNQATRSAITL 199