BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0061.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family ...   106   1e-23
VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family ...    72   3e-13

>RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family Rso
           Ralstonia solanacearum
          Length = 270

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 60/72 (83%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
            I+A VG ++R IPV++V+Y EATDKYVNVVT  G +LIRTSLREL+ QLDP+ FWQVHR
Sbjct: 167 FIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHR 226

Query: 61  GTVVQIAEVAAA 72
           GTVV +A VA+A
Sbjct: 227 GTVVNVAHVASA 238


>VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family Vch Vibrio
           cholerae
          Length = 261

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 4/77 (5%)

Query: 2   IRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADG----EALIRTSLRELIPQLDPERFWQ 57
           ++A+ G ++ LI V++++Y +A DKY+++    G    E L+R+SL+EL+ QLDP +FWQ
Sbjct: 157 LKASKGEEIHLIAVNELLYVKAEDKYLSLYKVHGATTHEYLLRSSLKELLAQLDPNQFWQ 216

Query: 58  VHRGTVVQIAEVAAAPR 74
           +HR  VV + ++    R
Sbjct: 217 IHRSIVVNVGKIDKVTR 233