BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0060.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family ...   130   2e-30
VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family ...   113   2e-25
yehT [KT] COG3279 Response regulator of the LytR/AlgR family Eco...    94   1e-19
ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family Ec...    94   1e-19
ECs2936 [KT] COG3279 Response regulator of the LytR/AlgR family ...    94   1e-19

>RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family Rso
           Ralstonia solanacearum
          Length = 270

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 98/156 (62%), Gaps = 15/156 (9%)

Query: 1   MPATPPPARALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQA----LALQPD 56
           MP  P   R LIA+DE  LAD+L A+L  LWPG  IA  V +G +A++          PD
Sbjct: 1   MPIAP---RLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPD 57

Query: 57  VLFLDIRMPGQSGLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPAN 116
           V+FLDIRMPG SG+E ARELA     QRP  L+VFVTAYD +A+ AFEQAA+DYVLKP  
Sbjct: 58  VVFLDIRMPGLSGIEVARELAGRA--QRP--LVVFVTAYDQFALDAFEQAAVDYVLKPVQ 113

Query: 117 DERLALTVARLQTRLKNTNDQGL----EQVLAQLXQ 148
            ERLA TV RL  RL    D G      Q LAQL +
Sbjct: 114 TERLAATVRRLTARLAERPDGGAAADPAQTLAQLVE 149


>VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family Vch Vibrio
           cholerae
          Length = 261

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 88/144 (61%), Gaps = 10/144 (6%)

Query: 10  ALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQSG 69
           A++A+DE LL   L+  L  LWP L+I     NG  A++     QPDV+FLDIRMP   G
Sbjct: 8   AVLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMDG 67

Query: 70  LEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQT 129
           +E AR L      Q   PL+VF+TAYD+YA+ AFE  AIDY+LKP +  RLA    +LQ 
Sbjct: 68  IEVARRLLQ----QPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQ 123

Query: 130 RLKN----TNDQGLEQVLAQLXQV 149
           +L+     +ND  L Q+++Q  Q+
Sbjct: 124 QLRRNVAPSND--LAQLMSQFEQL 145


>yehT [KT] COG3279 Response regulator of the LytR/AlgR family Eco
           Escherichia coli K12
          Length = 244

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 6/120 (5%)

Query: 9   RALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQS 68
           + LI +DE L  + L   LQ     ++I G  SN +  +     L+PDVLFLDI+MP  S
Sbjct: 8   KVLIVDDEPLARENLRVFLQE-QSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 69  GLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           GLE    L    P  RP+  +VF+TA+D+YAI+AFE+ A DY+LKP ++ RL  T+ARL+
Sbjct: 67  GLEMVGMLD---PEHRPY--IVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121


>ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family EcZ
           Escherichia coli O157:H7 EDL933
          Length = 244

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 6/120 (5%)

Query: 9   RALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQS 68
           + LI +DE L  + L   LQ     ++I G  SN +  +     L+PDVLFLDI+MP  S
Sbjct: 8   KVLIVDDEPLARENLRVFLQE-QSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 69  GLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           GLE    L    P  RP+  +VF+TA+D+YAI+AFE+ A DY+LKP ++ RL  T+ARL+
Sbjct: 67  GLEMVGMLD---PEHRPY--IVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121


>ECs2936 [KT] COG3279 Response regulator of the LytR/AlgR family Ecs
           Escherichia coli O157:H7
          Length = 244

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 6/120 (5%)

Query: 9   RALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQS 68
           + LI +DE L  + L   LQ     ++I G  SN +  +     L+PDVLFLDI+MP  S
Sbjct: 8   KVLIVDDEPLARENLRVFLQE-QSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 69  GLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           GLE    L    P  RP+  +VF+TA+D+YAI+AFE+ A DY+LKP ++ RL  T+ARL+
Sbjct: 67  GLEMVGMLD---PEHRPY--IVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121