BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0048.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3188 [G] COG0395 ABC-type sugar transport system, permease com... 361 1e-99 mlr6653 [G] COG0395 ABC-type sugar transport system, permease co... 348 6e-96 mlr3053 [G] COG0395 ABC-type sugar transport system, permease co... 348 9e-96 SMc04394 [G] COG0395 ABC-type sugar transport system, permease c... 341 1e-93 BMEII0592 [G] COG0395 ABC-type sugar transport system, permease ... 339 4e-93 >PA3188 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 281 Score = 361 bits (926), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/280 (62%), Positives = 217/280 (77%), Gaps = 9/280 (3%) Query: 20 TIGRVLIYVLLVLVALYYLAPLYVMITTSLKSLDEIRTSNLLALPMAPTTAAWGKAWDSA 79 ++ R+ +++ L YL PL VM+ TS K+ D+IRT NLL+LP T W KAWDS Sbjct: 11 SVSRLAVHLTLWGACALYLVPLLVMLLTSFKTPDDIRTGNLLSLPDTFTVIGWLKAWDS- 69 Query: 80 CTGVDCGGLAPFFWNSIKMTIPAVLISTLIGSLNGYVLAHWRFRGSEALFAGLMVGCFIP 139 + FFWNS+ +T+P VLIST IG+LNGYVL+ WRFRGS+ F L+ GCF+P Sbjct: 70 --------VGAFFWNSVLITVPGVLISTFIGALNGYVLSMWRFRGSQLFFGALLFGCFLP 121 Query: 140 FQVVILPMARLLGMFDLANTTPGLIFVHIVYGIAFTTLFFRNYYVTVPEELVKAARIDGA 199 FQV++LPM+ LG LANTT GL+ VH++YG+AFTTLFFRNY+V +P+ LVKAAR+DGA Sbjct: 122 FQVILLPMSFTLGKLGLANTTSGLVLVHVIYGLAFTTLFFRNYFVAIPDALVKAARLDGA 181 Query: 200 GFFLTYRKIIFPLSLPIFMVCFIWQFTQIWNDFLFGVVFGGSDAKPVTVALNNLVNTSTG 259 GFF + +I+ P+S PI MVC IWQFTQIWNDFLFGVVF D++P+TVALNNLVN +TG Sbjct: 182 GFFTIFLRILLPMSTPIVMVCLIWQFTQIWNDFLFGVVFASGDSQPITVALNNLVNITTG 241 Query: 260 VTEYNVNMAAAIIAALPTLLVYILAGKYFVRGLTAGAVKG 299 V EYNV+MAAA+IAALPTL+VY+LAGKYFVRGLTAGAVKG Sbjct: 242 VKEYNVDMAAAMIAALPTLVVYVLAGKYFVRGLTAGAVKG 281 >mlr6653 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 292 Score = 348 bits (894), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 170/289 (58%), Positives = 212/289 (73%) Query: 11 NPNQERQPLTIGRVLIYVLLVLVALYYLAPLYVMITTSLKSLDEIRTSNLLALPMAPTTA 70 N R+ IGR IY L +A +YL PL+VMITTS+K LDEI + + LP + Sbjct: 4 NAASLRRQHGIGRAFIYGSLFFMAAFYLMPLWVMITTSVKHLDEIYAGSFIGLPTQISFD 63 Query: 71 AWGKAWDSACTGVDCGGLAPFFWNSIKMTIPAVLISTLIGSLNGYVLAHWRFRGSEALFA 130 AW AW AC G C GL P+F NS+ +T+PAV +ST IG++NGYV+ WRF GS +F Sbjct: 64 AWRSAWSEACNGTACRGLKPYFINSLLVTVPAVFLSTGIGAINGYVITKWRFPGSNVIFG 123 Query: 131 GLMVGCFIPFQVVILPMARLLGMFDLANTTPGLIFVHIVYGIAFTTLFFRNYYVTVPEEL 190 L+ GCF+PFQ VILPMA+ LG+ LA T PGL+ VH VYGIAFTTLFFRNY+V +P+EL Sbjct: 124 LLLFGCFLPFQAVILPMAQTLGILGLAGTLPGLVLVHTVYGIAFTTLFFRNYFVGIPDEL 183 Query: 191 VKAARIDGAGFFLTYRKIIFPLSLPIFMVCFIWQFTQIWNDFLFGVVFGGSDAKPVTVAL 250 V+AA+IDGAGF + I+ P +LPI +V IWQFTQIWND+LFG F + P+TVAL Sbjct: 184 VRAAQIDGAGFIRIFVSIMLPTALPIIVVSCIWQFTQIWNDYLFGASFTAGENAPITVAL 243 Query: 251 NNLVNTSTGVTEYNVNMAAAIIAALPTLLVYILAGKYFVRGLTAGAVKG 299 NN+VN S G +YNV+MAAA+IAALPTL+VY++AG+YFVRGLTAGAVKG Sbjct: 244 NNIVNVSMGRKQYNVDMAAAMIAALPTLIVYVVAGRYFVRGLTAGAVKG 292 >mlr3053 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 314 Score = 348 bits (893), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 178/293 (60%), Positives = 220/293 (75%), Gaps = 16/293 (5%) Query: 23 RVLIYVLLVLVALYYLAPLYVMITTSLKSLDEIRTSNLLALPMAPTTAAWGKAWDSACTG 82 RV+IY LL L AL+YL PL+VM+ TS K++DEI+ N+LALP APT W KAW C G Sbjct: 22 RVVIYGLLALFALFYLMPLFVMLVTSFKTMDEIQNGNMLALPKAPTFDPWLKAWGETCVG 81 Query: 83 VDCGGLAPFFWNSIKMTIPAVLISTLIGSLNGYVLAHWRFRGSEALFAGLMVGCFIPFQV 142 + C G+ +FWNSIKM +PAVLIST++G+LNGYVL WRFRG+ +F ++ CFIPFQ Sbjct: 82 LTCAGIKGYFWNSIKMVVPAVLISTMLGALNGYVLTKWRFRGATLVFGLMLFACFIPFQS 141 Query: 143 VILPMARLLG---------------MFDLANTTPGLIFVHIVYGIAFTTLFFRNYYVTVP 187 V+LPMA +LG F L N+T L+FVH+VYGI FTTLFFRNYY P Sbjct: 142 VLLPMATILGSVGRFGVGLQNSVGTSFGLGNSTVNLVFVHVVYGIGFTTLFFRNYYEAFP 201 Query: 188 EELVKAARIDGAGFFLTYRKIIFPLSLPIFMVCFIWQFTQIWNDFLFGVVFGGS-DAKPV 246 EL+KAA++DGA FF +R+I+ P S+PIF+V I+QFT IWNDFLF + G+ DA P+ Sbjct: 202 NELIKAAQVDGASFFQIFRRIMLPNSMPIFVVTVIYQFTNIWNDFLFASAYAGTGDAMPM 261 Query: 247 TVALNNLVNTSTGVTEYNVNMAAAIIAALPTLLVYILAGKYFVRGLTAGAVKG 299 TVALNN+VNTSTGV EYNVNMAAA+IAALPTL+VY++AG+YFVRGL AGAVKG Sbjct: 262 TVALNNVVNTSTGVVEYNVNMAAAMIAALPTLIVYVVAGRYFVRGLMAGAVKG 314 >SMc04394 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 293 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 173/292 (59%), Positives = 210/292 (71%), Gaps = 2/292 (0%) Query: 10 GNPNQER--QPLTIGRVLIYVLLVLVALYYLAPLYVMITTSLKSLDEIRTSNLLALPMAP 67 G PN E + R LIY L+L ALY L PLYVM+ SLK LDEIR +L LP Sbjct: 2 GAPNPENVISHNRLTRALIYSALILFALYSLLPLYVMLVNSLKPLDEIRQGGMLNLPQTW 61 Query: 68 TTAAWGKAWDSACTGVDCGGLAPFFWNSIKMTIPAVLISTLIGSLNGYVLAHWRFRGSEA 127 T W AW +A GV GL PFF NSI M +PAV IST+IG+LNGYVL WRF G+ Sbjct: 62 TVEPWLSAWSTAQIGVQPTGLRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGANI 121 Query: 128 LFAGLMVGCFIPFQVVILPMARLLGMFDLANTTPGLIFVHIVYGIAFTTLFFRNYYVTVP 187 F L++ CFIPFQ+V++PMAR+LG+ +A + GLI VH+VYGI FTTL+FRNYY P Sbjct: 122 FFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILVHVVYGIGFTTLYFRNYYEAFP 181 Query: 188 EELVKAARIDGAGFFLTYRKIIFPLSLPIFMVCFIWQFTQIWNDFLFGVVFGGSDAKPVT 247 ELV+AA+IDGA FF +R+I+ P S PI +V IWQFT IWNDFLFG F G + P+T Sbjct: 182 TELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPMT 241 Query: 248 VALNNLVNTSTGVTEYNVNMAAAIIAALPTLLVYILAGKYFVRGLTAGAVKG 299 VALNNLV++STGV EYNV+ A AI+AALPTL+VYI++G+YFVRGL +GAVKG Sbjct: 242 VALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG 293 >BMEII0592 [G] COG0395 ABC-type sugar transport system, permease component Bme Brucella melitensis Length = 293 Score = 339 bits (870), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 166/277 (59%), Positives = 204/277 (73%) Query: 23 RVLIYVLLVLVALYYLAPLYVMITTSLKSLDEIRTSNLLALPMAPTTAAWGKAWDSACTG 82 R LIY L+ A YYL PLYVM+ S K L+EIR +L LP T W AW +A G Sbjct: 17 RALIYSALIFFAFYYLLPLYVMLVNSFKPLEEIRQGGMLNLPQQWTIEPWLSAWSTAQIG 76 Query: 83 VDCGGLAPFFWNSIKMTIPAVLISTLIGSLNGYVLAHWRFRGSEALFAGLMVGCFIPFQV 142 V GL PFF NSI M +PAV IST++G+LNGYVL WRFRGS F L++ CFIPFQ+ Sbjct: 77 VQPTGLKPFFINSILMVVPAVAISTIVGALNGYVLTKWRFRGSNIFFGLLLLSCFIPFQI 136 Query: 143 VILPMARLLGMFDLANTTPGLIFVHIVYGIAFTTLFFRNYYVTVPEELVKAARIDGAGFF 202 V++PMAR+LG+ +A T GLI VH+VYG+ FTTL+FRNYY P ELV+AA+IDGA FF Sbjct: 137 VLIPMARVLGILGIAGTIWGLILVHVVYGLGFTTLYFRNYYEAFPTELVRAAKIDGASFF 196 Query: 203 LTYRKIIFPLSLPIFMVCFIWQFTQIWNDFLFGVVFGGSDAKPVTVALNNLVNTSTGVTE 262 + +I+ P S PI +V IWQFT IWNDFLFG F G+ + P+TVALNNLV++STGV E Sbjct: 197 QIFWRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGAHSTPMTVALNNLVSSSTGVKE 256 Query: 263 YNVNMAAAIIAALPTLLVYILAGKYFVRGLTAGAVKG 299 YNV+ A AI+AALPTL+VYI++G+YFVRGL +GAVKG Sbjct: 257 YNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG 293