BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0026.p         (899 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1189_1 [L] COG3893 Inactivated superfamily I helicase Rso Ral...   308   3e-83
RSc1189_2 [L] COG2887 RecB family exonuclease Rso Ralstonia sola...   181   6e-45

>RSc1189_1 [L] COG3893 Inactivated superfamily I helicase Rso Ralstonia
           solanacearum
          Length = 687

 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 254/671 (37%), Positives = 332/671 (49%), Gaps = 93/671 (13%)

Query: 45  VVVPAFSHAVHWRAALARAIQRRSPQQAGFIP--PRINTMAGWMAMQAPQP----QQDDS 98
           VVVP  +     R AL       S Q AG +   PRI T+  W+    P+      +   
Sbjct: 37  VVVPTAAQIPGVRGAL-----HASAQAAGALRLLPRILTLGHWLLDLPPEAGLPAARSTL 91

Query: 99  ERLMQLYAQLRQHGWLKXPL-----------AQTLLSLSDELTQALLP------------ 135
            RL+ +   L+   WL+  L           AQ L+++SDEL+Q  L             
Sbjct: 92  SRLLAVQQALKTQAWLREALGAQDEAALWGVAQVLVTVSDELSQRWLTLDAADSETDGRH 151

Query: 136 -AMERAPGDADERWQAALAQLPPSARSMLSDEAQLVWSIWQSQLDGNDKTVQRYKRMLEL 194
            A+E A   A ER  A L++        L  E+++V + W+     +D    R + M  L
Sbjct: 152 DALETALSAALERTYAQLSE------RFLGTESRIVLTFWRLLSGASDPIPVRLRAMRRL 205

Query: 195 ARPGAHAPLAPLMWISPVAPEPMELAFLEAYGEHAEVQPVQIDWRGPD-IP--------- 244
                 A   P++W+SP  PE  +L FL        V  +  DW+  + +P         
Sbjct: 206 L----DALRGPVVWMSPTDPEGADLDFLTRAAGRVPVLRIGYDWQAREPVPEAAAPATHG 261

Query: 245 ---LLYQTAWPELCDAPLAPTPDDLFA-PQMDAPTLALCPAASLEDASLQSAQIVLDWLR 300
               L   AWPE C   +AP   +  A  +   P L +  AA  ED +  +A  ++DWL 
Sbjct: 262 AFRTLLLHAWPE-CGT-VAPQAVEASAEAERPPPGLRIASAARFEDEAAFAAHTLVDWLN 319

Query: 301 QGKDDIAIVAQDRVSARRLRALLERAQVSVADETGWKLSTTRAAAAMAAWCDVVTSRGET 360
            G+  +A+VAQDR+ ARR+RALL R  V V DETGWKLSTTRAAAA+  W DVV   G+T
Sbjct: 320 AGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWIDVVQGDGDT 379

Query: 361 TALLDLLKSPFIFAGMADKSAA----VMQIEWQLRRENVSGEWRSVQAVFK--------- 407
            ALLDLLKSPF        S+     V ++E ++RR NVSG W  ++ +           
Sbjct: 380 AALLDLLKSPFCLRDAEAPSSVAPAWVAELERRVRRHNVSGGWGRLRRLVALRGTDTDVA 439

Query: 408 ----------GGSLAAEVLQAVAAQAALFD--GRKSLIDWGACAQQLLDALDMRGALAQD 455
                      G L AE L  +A +AA +   G  +L  W       LD L MR  L  D
Sbjct: 440 EAADTGDGPPAGRL-AERLGLLADEAAQWRRAGHATLEAWVTLLAGTLDRLRMRAGLQND 498

Query: 456 IAGQQVLQLLDDLGAR-QEDADGGELFSFSEWRALLNLQLDAVTFMPPI--ADRRIVMLP 512
            AG+Q+L  LD L       AD G  FS  EWRALL++ L++  F  P   ADRR+V+LP
Sbjct: 499 DAGRQLLDWLDRLRVSVHGSADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILP 558

Query: 513 LNGARLRNFDAVLVIGADAEHLPSQPQETLFFSNAVRHELGLPTRLSRQHQQLRDLTELL 572
           LNGAR+R FD V+V+G D   LPS   E LFFSN VR ELGLP R  R  QQ RDL E+L
Sbjct: 559 LNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVL 618

Query: 573 CANREVVLCWQTHKD-GEPNPKSPWLERLELCLAKAGMEPLRELRHDLPLHELLAAPSIM 631
               EVVL WQ H   GEPN  S WLERL+  LA AGM    ++   LP  +    P+ M
Sbjct: 619 LNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAAAGMRI--DVPVVLPALQTARQPTDM 676

Query: 632 PAPSAAELTPA 642
           PAP+A  L P+
Sbjct: 677 PAPAAPVLVPS 687


>RSc1189_2 [L] COG2887 RecB family exonuclease Rso Ralstonia solanacearum
          Length = 275

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 152/261 (58%), Gaps = 9/261 (3%)

Query: 644 LSASAYNRLVACPYQFFAQHMLRVNVMDELSDMPEKRDYGGWLHEILMKYHEALRDAKTP 703
           LSA+AYN L  CPYQFF   MLR+  ++E+SD  EKRD G  LH IL ++H  L D  TP
Sbjct: 2   LSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLD--TP 59

Query: 704 VGQ---RAALLATISDDVFAKAIREHPAALGYEARWRKVMPAYLVWANEREAQGWHFVLG 760
           +     R ALL  ++D+ FA  + E   AL +  RW+ VM +YL W   REA GW F  G
Sbjct: 60  MADPADRLALLQALTDERFAPLLAEDGHALRFYRRWQGVMASYLAWQAAREADGWRFEAG 119

Query: 761 ELPLQHALAWPDG-GIELYGRLDRVDENAEGERAVLDYKTSSLPSLVAKLKNA-EDLQLP 818
           E+    ++A P    + L GR+DR+D + E   AVLDYKT S  +L  K+K   ED QLP
Sbjct: 120 EVDADASIALPGAQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLP 179

Query: 819 FYGLLSGRTMAAAHYVALE-PSRDKTGDVAAPDFEARQQALQQQIITVVQAIGNDAPLPA 877
           FYGLL  R   A  +V+L+  +R    +   PDF      L +Q+   + A+   APLPA
Sbjct: 180 FYGLLDARA-GAGGWVSLDGEARGDKRETGLPDFTEVVGWLTEQMGKDMSALAAGAPLPA 238

Query: 878 NGIESVCQYCDVRGLCRKGVW 898
            G ES C+YC  RGLCRKG W
Sbjct: 239 FGDESACRYCAARGLCRKGYW 259