BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0022.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport...   159   2e-39
BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo...    96   2e-20
SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor...    93   1e-19
AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport...    91   6e-19

>RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 402

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 86/99 (86%)

Query: 24  AAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNK 83
           A AQ+SG+ VKIG ITDLSG+Y DIDGQGGVEA+KMAI D GG V GK IEL+TADHQNK
Sbjct: 22  AHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKVLGKPIELVTADHQNK 81

Query: 84  ADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGEN 122
           ADIAASKAREW DQQG+DML+GGTNS TSLAM+KVA E 
Sbjct: 82  ADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEK 120


>BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Bme Brucella melitensis
          Length = 401

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 67/99 (67%)

Query: 24  AAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNK 83
           +AA+IS   VKIG++ D SGVY D  G+   EA KMA  DFGG+V G  IE+ITADHQNK
Sbjct: 19  SAAEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNK 78

Query: 84  ADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGEN 122
            D+A++ AR+W+D + VD ++  T S   LA+  ++ E 
Sbjct: 79  PDVASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEK 117


>SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Sme Sinorhizobium meliloti
          Length = 401

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 1   MKVKMTAIAATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMA 60
           M  K+ A  A V+A   A     A A  S   VKIG++ D SGVY D  G+   EA  MA
Sbjct: 1   MHKKLIATLAMVLAGSTA-----ALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMA 55

Query: 61  IADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAG 120
           + DFGG V G  +E++TADHQNK DIA++ AR+W+D + VD ++  T S  +LA+  ++ 
Sbjct: 56  VEDFGGKVLGVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISK 115

Query: 121 E 121
           E
Sbjct: 116 E 116


>AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 402

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 63/89 (70%)

Query: 27  QISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNKADI 86
           +IS   VKIG++ D SGVY +  G+   EA KMA+ DFGG V G  +E++TADHQNKAD+
Sbjct: 23  EISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADV 82

Query: 87  AASKAREWFDQQGVDMLIGGTNSGTSLAM 115
           A++ AR+W+D + VD ++  T+S   LA+
Sbjct: 83  ASNIARQWYDTEQVDSIMELTSSSVGLAV 111