BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0020.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1182 [J] COG0254 Ribosomal protein L31 Rso Ralstonia solanace...   123   1e-28
XF1534 [J] COG0254 Ribosomal protein L31 Xfa Xylella fastidiosa ...   117   7e-27
BH3780 [J] COG0254 Ribosomal protein L31 Bha Bacillus halodurans      100   7e-22
VC0878 [J] COG0254 Ribosomal protein L31 Vch Vibrio cholerae           99   3e-21
Cgl0848 [J] COG0254 Ribosomal protein L31 Cgl Corynebacterium gl...    95   5e-20

>RSc1182 [J] COG0254 Ribosomal protein L31 Rso Ralstonia solanacearum
          Length = 87

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 1  MKPGIHPDYREVLFHDVSNDFKFITRSTIGTREKAEF-EGKEYPLVKIEVSSESHPFYTG 59
          MK   HP+YREV+F D+S+DF F+TRSTI T+E   + +GKEYPL KIEVSSESHPFYTG
Sbjct: 1  MKENTHPNYREVVFQDMSSDFSFVTRSTIQTKESIVWKDGKEYPLAKIEVSSESHPFYTG 60

Query: 60 KHKIVDTAGRVEKFRQKFGTVGSKTA 85
            KI+DTAGRVEKFRQKFG+   K A
Sbjct: 61 TQKIMDTAGRVEKFRQKFGSKAGKAA 86


>XF1534 [J] COG0254 Ribosomal protein L31 Xfa Xylella fastidiosa 9a5c
          Length = 80

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 70/79 (88%), Gaps = 1/79 (1%)

Query: 1  MKPGIHPDYREVLFHDVSNDFKFITRSTIGTREKAEFE-GKEYPLVKIEVSSESHPFYTG 59
          MKP IHP YREV+FHDV+++FKF+TRST+ T+E   +E G+EYPLVK+E+SS SHPFYTG
Sbjct: 1  MKPEIHPIYREVVFHDVTSNFKFLTRSTMSTKETTLWEDGREYPLVKVEISSASHPFYTG 60

Query: 60 KHKIVDTAGRVEKFRQKFG 78
          KHK+VDT+GR++KF++++ 
Sbjct: 61 KHKLVDTSGRIDKFKKRYA 79


>BH3780 [J] COG0254 Ribosomal protein L31 Bha Bacillus halodurans
          Length = 81

 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 1  MKPGIHPDYREVLFHDVSNDFKFITRSTIGTREKAEFE-GKEYPLVKIEVSSESHPFYTG 59
          MKPGIHPDY++V+F D S  FKF++ ST  + E  E+E G  YPL+K+E+SS+SHPFYTG
Sbjct: 1  MKPGIHPDYKKVVFMDTSTGFKFLSGSTKTSNETIEWEDGNTYPLIKVEISSDSHPFYTG 60

Query: 60 KHKIVDTAGRVEKFRQKF 77
          K K+ D  GRV++F++K+
Sbjct: 61 KQKLADAGGRVDRFKKKY 78


>VC0878 [J] COG0254 Ribosomal protein L31 Vch Vibrio cholerae
          Length = 85

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 56/78 (71%)

Query: 1  MKPGIHPDYREVLFHDVSNDFKFITRSTIGTREKAEFEGKEYPLVKIEVSSESHPFYTGK 60
          MK GIHPDYR+V+FHD + D  F+  ST+ T    E+EGK YP + IEVSSESHPFYTGK
Sbjct: 1  MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGK 60

Query: 61 HKIVDTAGRVEKFRQKFG 78
           ++V   GRV  F ++FG
Sbjct: 61 QRVVQKEGRVANFTRRFG 78


>Cgl0848 [J] COG0254 Ribosomal protein L31 Cgl Corynebacterium glutamicum
          Length = 88

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 1  MKPGIHPDYREVLFHDVSNDFKFITRSTIGTREKAEFE-GKEYPLVKIEVSSESHPFYTG 59
          MK  IHPDY  V+F D    F+F+T+ST  +     +E G EYPL+ ++V+SESHPF+TG
Sbjct: 1  MKKDIHPDYHAVVFQDAGTGFQFLTKSTASSDRTVSWEDGNEYPLIVVDVTSESHPFWTG 60

Query: 60 KHKIVDTAGRVEKFRQKFGTVGSK 83
            +++DTAGRVEKF ++FG +  +
Sbjct: 61 AQRVMDTAGRVEKFERRFGGMARR 84