BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0018.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1180 [V] COG0534 Na+-driven multidrug efflux pump Rso Ralston...    92   2e-19
BH0860 [V] COG0534 Na+-driven multidrug efflux pump Bha Bacillus...    59   3e-09

>RSc1180 [V] COG0534 Na+-driven multidrug efflux pump Rso Ralstonia
          solanacearum
          Length = 448

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query: 13 IASLAWPILIGQLALIANGVIDTAMVSRFSAMDLAALSLGVSIYVSVFVGLSGVLQALLP 72
          IA+LAWP+L+GQLA+IA GV+DTAM  R SA DLAA+ LG SIYV+V++ L GVLQAL P
Sbjct: 9  IAALAWPVLVGQLAVIAFGVLDTAMAGRASAADLAAIGLGGSIYVTVYISLMGVLQALSP 68

Query: 73 TIGQLYGARRR 83
            GQLYGA R 
Sbjct: 69 IAGQLYGAGRH 79


>BH0860 [V] COG0534 Na+-driven multidrug efflux pump Bha Bacillus
          halodurans
          Length = 458

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 19 PILIGQLALIANGVIDTAMVSRFSAMDLAALSLGVSIYVSVFVGLSGVLQALLPTIGQLY 78
          PILI Q+ L A    DT M  +  A DLA +++G S++V VF GL+GVL AL P I Q  
Sbjct: 20 PILITQIGLYAMNFFDTVMSGQAGANDLAGVAIGSSLWVPVFTGLNGVLLALTPIIAQSI 79

Query: 79 GARRR 83
          GA +R
Sbjct: 80 GAEKR 84