BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0006.p (426 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM0273 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ... 464 e-130 PA5169 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ... 449 e-126 VC1927 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ... 422 e-117 PA0886 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ... 414 e-115 BH2671 [G] COG1593 TRAP-type C4-dicarboxylate transport system, ... 324 2e-88 >PM0273 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Pmu Pasteurella multocida Length = 427 Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/406 (56%), Positives = 311/406 (76%) Query: 17 GMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIPFFILAGNFLTHGGVAR 76 G+PI+ISLGL+ + + + S+A+KLF E + ++AIPFF+LAG F+T GGVA+ Sbjct: 17 GVPIAISLGLSGAIVIMLFSQDSLSSLAIKLFETSEHYTLLAIPFFLLAGAFMTTGGVAK 76 Query: 77 RMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGSIILPAMVRQGFPNKFG 136 R+I+FA A VGH GGLA+A VM+C LFAA+SGSSPATV A+GSI + MVR G+P FG Sbjct: 77 RLIDFANATVGHIRGGLAIASVMSCMLFAALSGSSPATVAAVGSIAIAGMVRSGYPIGFG 136 Query: 137 AGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLMLAFLLGATTWYLARKH 196 G+I +G LGILIPPS+VMV+Y+ +T TSVGKLFMAGVVPGL+L L + +AR Sbjct: 137 TGIICNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGVVPGLLLGVALMVAIYIVARIK 196 Query: 197 NYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEAAAMAAVYAFIIAVFVY 256 N P P+AS E A RK+ WGL L+VI++GGIY+GIFTPTEAAA+AAVY+F++AVF+Y Sbjct: 197 NLPAQPRASVKEWFRAARKAIWGLLLMVIILGGIYSGIFTPTEAAAVAAVYSFVVAVFIY 256 Query: 257 KDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQAMAAMITDSGLGPITFL 316 KD+ L + P+VLL+S +S ML++II NA+LF+ ++T+E IPQ + +T L P FL Sbjct: 257 KDIKLSECPRVLLESGKLSVMLMFIIANAMLFAHVLTTEQIPQLITETVTKMELSPWMFL 316 Query: 317 LVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGILIVVNMEVGMCHPPVGL 376 +VVN++LL+AG MEPS+I+LI+APILFP+A++LGIDP+H G+++VVNME+GM PP+GL Sbjct: 317 IVVNIVLLIAGAFMEPSAIILILAPILFPIAVQLGIDPIHLGVIMVVNMEIGMITPPIGL 376 Query: 377 NLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWLPN 422 NL+VAS ++KM +T + A PWL+ +L FL ITY+P IS+ LPN Sbjct: 377 NLFVASAVSKMPLTAVIRAATPWLMLLLAFLIAITYIPAISMALPN 422 >PA5169 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Pae Pseudomonas aeruginosa Length = 427 Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/410 (56%), Positives = 318/410 (77%), Gaps = 2/410 (0%) Query: 14 MLTGMPISISLGLT-VLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIPFFILAGNFLTHG 72 M G+PI++SLGL+ LT L D ++S+A+KLF E + ++AIPFF+L+G F+T G Sbjct: 14 MFIGVPIAVSLGLSGALTILLFSPD-SVRSLAIKLFETSEHYTLLAIPFFLLSGAFMTTG 72 Query: 73 GVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGSIILPAMVRQGFP 132 GVARR+I+FA A VGH GGLA+A V+AC LFAA+SGSSPATV A+GSI + MVR G+P Sbjct: 73 GVARRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGYP 132 Query: 133 NKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLMLAFLLGATTWYL 192 FGAG++ +G LGILIPPSIVMV+Y+ +T TSVGKLF+AGVVPGL+L +L + + Sbjct: 133 QAFGAGIVCNAGTLGILIPPSIVMVVYAAATETSVGKLFIAGVVPGLLLGLILMVVIYIV 192 Query: 193 ARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEAAAMAAVYAFIIA 252 AR P +P+ S E A+ RK+ WGL L+VI++GGIY+G FTPTEAAA+AAVY+ +A Sbjct: 193 ARVKKLPAMPRVSLREWLASARKALWGLLLMVIILGGIYSGAFTPTEAAAVAAVYSAFVA 252 Query: 253 VFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQAMAAMITDSGLGP 312 +FVY+DM L + PKVLL+S ++ ML++II NA+LF+ ++T+E IPQ++A+ +T+ GL P Sbjct: 253 LFVYRDMRLSECPKVLLESGKLTIMLMFIIANAMLFAHVLTTEQIPQSIASWVTELGLSP 312 Query: 313 ITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGILIVVNMEVGMCHP 372 FLLVVN++LL+AGN MEPS+I+LI+API FP+AM+LGIDP+H GI++VVNME+G+ P Sbjct: 313 WMFLLVVNIVLLIAGNFMEPSAIILILAPIFFPIAMELGIDPIHLGIIMVVNMEIGLITP 372 Query: 373 PVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWLPN 422 PVGLNL+V S +T M + A +PWL+ +LVFL ++TY+P +SL LPN Sbjct: 373 PVGLNLFVTSAVTGMPLGATIRAALPWLMILLVFLIIVTYIPAVSLALPN 422 >VC1927 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Vch Vibrio cholerae Length = 453 Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust. Identities = 224/444 (50%), Positives = 311/444 (70%), Gaps = 21/444 (4%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIE-KFEIMAI 59 M A++F+L+ G+M+ G+PI+ISLGL+ + FL +D + SVA LF + ++AI Sbjct: 1 MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60 Query: 60 PFFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIG 119 PFFILA F++ GGVA+R+I FA AMVG + GGLA+A V+AC +FAA+SGSSPATVVAIG Sbjct: 61 PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120 Query: 120 SIILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGL 179 SI++ MV+ G+ +F AGVI +G LGILIPPSIVMV+YS +TN SVG++F+ GVVPGL Sbjct: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180 Query: 180 MLAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTE 239 + +L + AR N P+ P W E A +++ WGL L+VI++GGIY GIFTPTE Sbjct: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240 Query: 240 AAAMAAVYAFIIAVFVYKDMG--------------------LKQVPKVLLDSASMSAMLL 279 AAA+AAVY+F IA F+Y+DMG K L D+ ++ ML+ Sbjct: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300 Query: 280 YIITNAVLFSFLVTSENIPQAMAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIM 339 +II NA++ ++T E IPQ + + +GLGPITFL+VVN++LL+ G MEPS +++I+ Sbjct: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360 Query: 340 APILFPVAMKLGIDPVHFGILIVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPW 399 AP++FP+A+ LGIDP+H GI++VVNME+GM PPVGLNL+V SG+ KM + + A +PW Sbjct: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420 Query: 400 LLTMLVFLALITYVPQISLWLPNL 423 + M +FL ++TYVP +S WLP L Sbjct: 421 VGVMFLFLIIVTYVPWVSTWLPTL 444 >PA0886 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Pae Pseudomonas aeruginosa Length = 427 Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/409 (59%), Positives = 319/409 (77%), Gaps = 2/409 (0%) Query: 17 GMPISISLGLT-VLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIPFFILAGNFLTHGGVA 75 G+PI+ISLGL+ LT L D ++S+A+KLF E + ++AIPFF+L+G F+T GGVA Sbjct: 17 GVPIAISLGLSGALTILLFSPD-SVRSLAIKLFETSEAYTLLAIPFFLLSGAFMTTGGVA 75 Query: 76 RRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGSIILPAMVRQGFPNKF 135 RR+I+FA A VGH GGLA+A V+AC LFAA+SGSSPATV A+GSI + MVR G+P F Sbjct: 76 RRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAVAGMVRSGYPRAF 135 Query: 136 GAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLMLAFLLGATTWYLARK 195 GAG+I +G LGILIPPSIVMV+Y+ +T TSVGKLF+AGVVPGL+L +L + +AR Sbjct: 136 GAGIICNAGTLGILIPPSIVMVVYAAATETSVGKLFVAGVVPGLLLGVILMVVIYIVARV 195 Query: 196 HNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEAAAMAAVYAFIIAVFV 255 P P+AS+ E AA R++GWGL L+VI++GGIY+G+FTPTEAAA+AAVY+ +A+FV Sbjct: 196 KKLPAQPRASFREWLAAARRAGWGLLLLVIILGGIYSGLFTPTEAAAVAAVYSAFVALFV 255 Query: 256 YKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQAMAAMITDSGLGPITF 315 YKDM L+ PKVLL+S +S ML++II NA+LF+ ++T+E IPQ + + GL PI F Sbjct: 256 YKDMRLRDCPKVLLESGRLSIMLMFIIANAMLFAHVLTTEQIPQQITEWVVQEGLTPIGF 315 Query: 316 LLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGILIVVNMEVGMCHPPVG 375 LL+VNV+LL+AG+ MEPS+IVLI+API FP+AMKLGIDP+H GI++VVNME+G+ HPPVG Sbjct: 316 LLMVNVVLLVAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVG 375 Query: 376 LNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWLPNLV 424 LNL+V S +T M + A +PWL+ +L+FL L+TYVP ISLWLP L+ Sbjct: 376 LNLFVTSAVTGMPLGATIRAALPWLMILLLFLILVTYVPLISLWLPGLL 424 >BH2671 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Bha Bacillus halodurans Length = 426 Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 175/424 (41%), Positives = 277/424 (65%), Gaps = 1/424 (0%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 M AA++F L+L +PI I+LGL L + +P++ +A L T ++ F +MA+P Sbjct: 1 MTAAVLFGSFALLLLLSVPIGIALGLATLLAILYSGTIPLEFLAQGLITSVDSFPLMAVP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAG + GGV R+ N A A+VG+ GG A+A V+ C FAA+SGS PATV AIG Sbjct: 61 FFILAGEIMARGGVTDRLFNVANALVGNRTGGFAIATVITCMFFAAISGSGPATVAAIGG 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 I++PAMV+ G+ +F ++ +G+LG++IPPSI MV+Y VS + S+G LF+ G++PGLM Sbjct: 121 IMIPAMVKHGYDKRFATALVAAAGSLGVIIPPSIPMVIYGVSASASIGGLFVGGIIPGLM 180 Query: 181 LAFLLGATTWYLARKHNYP-RLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTE 239 +A L A +Y +RK Y K S+ + ++ W L + I++GGIY G+FTPTE Sbjct: 181 IAGALMAYAYYYSRKKGYKGSTEKTSFKHILQSVWEAKWALVIPFIILGGIYGGVFTPTE 240 Query: 240 AAAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQ 299 AA +A VY+ + +Y+++ +KQ+P+V D+A +A +L I+ +A F L+T E IP Sbjct: 241 AAVVAVVYSLLAGFILYRELTIKQLPRVFADAALTTATILIIVGSATAFGRLLTIEQIPN 300 Query: 300 AMAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGI 359 +A + I +L++ +LLL+ G M+ + ++I+ PIL P+A+ LG DP+HFG+ Sbjct: 301 QVADWMLTISENKIILILLITILLLVVGCFMDTLAAIIILTPILLPIAVTLGYDPIHFGM 360 Query: 360 LIVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLW 419 ++VVN+ +G PP+G+NL+V SGI+ + I L+ A++P+ L M++ L ++ +VPQ++L+ Sbjct: 361 IMVVNLAIGFITPPLGVNLFVGSGISGISIESLSKAIVPFFLVMVLTLFILVFVPQLTLY 420 Query: 420 LPNL 423 L L Sbjct: 421 LVEL 424