BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0003.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 245 6e-65 PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 231 1e-60 PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 220 2e-57 BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 191 2e-48 VC1929 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 186 4e-47 >PA5167 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/248 (49%), Positives = 164/248 (66%), Gaps = 3/248 (1%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 ++APSLAKF K+ ++FDLP++F + + + R + P GK+L ++ KGITGL YW Sbjct: 87 IIAPSLAKFEQY-TKKLQIFDLPFLFDNIQAVDRFQQSPQGKELLTSMQDKGITGLGYWH 145 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NG K +SANKPL P D RGLK R+Q+SKVL+ Q +A+ ANP+ ++F+EVYQ LQTGVV+ Sbjct: 146 NGMKQLSANKPLREPKDARGLKFRVQASKVLEEQFKAVRANPRKMSFAEVYQGLQTGVVN 205 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTENP SN+Y+QKMHEVQK++T SDHG L Y VI N KFW+GLP D+R L M + T Sbjct: 206 GTENPWSNIYSQKMHEVQKYITESDHGVLDYMVITNTKFWNGLPEDVRGVLAKTMDEVTV 265 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 N A+ N + + + I L +++AEWRKA+ PV + IG DLI A Sbjct: 266 EVNKQAEALNQGDKQRIVEAKTSEIIELTPEQRAEWRKAMQPVWKKFEGEIGADLIKAA- 324 Query: 241 KEAAALGQ 248 EAA Q Sbjct: 325 -EAANQAQ 331 >PM0275 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pmu Pasteurella multocida Length = 372 Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 152/238 (63%), Gaps = 1/238 (0%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKF K+ ++FDLP++F E + R + GK L K +E KGITGL YW+ Sbjct: 129 MLAPSLAKFDKY-TKKIQIFDLPFLFDDIEAVQRFEQSEAGKSLLKSMEEKGITGLGYWN 187 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 N K +SANK L P D RGLK R+Q+S+VLDAQ +AL A P+ +AF E+YQ LQTGVV+ Sbjct: 188 NDLKQLSANKELREPKDARGLKFRVQNSEVLDAQFKALKAVPRKMAFGEMYQGLQTGVVN 247 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 G ENP SN+Y+QK+HEVQK +T S+HG L Y VIVN FW+ +P DIR L + + + Sbjct: 248 GAENPYSNIYSQKIHEVQKFITESNHGLLSYMVIVNTNFWNSIPEDIRAELSKILDEVSV 307 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAA 238 N + N A + + +TI L +++ +WR A+ PV Q IG DLI A Sbjct: 308 EVNKKSHDLNLADKQKIIDSKASTIITLTPEQREKWRDAVRPVWKQFEGEIGADLIQA 365 >PA0884 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 331 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKF ++ ++FDLP++F + + R P G+ L ++ KGI GLAYW Sbjct: 87 MLAPSLAKFEQY-TRKVQIFDLPFLFDDIQAVDRFQRSPQGRALLTSMQGKGILGLAYWH 145 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NG K +SAN+PL P D RGLK R+Q+S VL+ Q R L A + ++F+EVYQ LQTGVV+ Sbjct: 146 NGMKQLSANRPLLEPEDARGLKFRVQASDVLNEQFRQLRAISRKMSFAEVYQGLQTGVVN 205 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTEN SN +QK++EVQK+ T S+HG + Y VI N KFW+GLPADIR L+ M + T Sbjct: 206 GTENTWSNYESQKVNEVQKYFTESNHGLVDYMVITNAKFWNGLPADIREELQRIMDEVTV 265 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAA 238 N A++ N A + +G + I+ L+ +++A+WR+A+ PV + +G DL+ A Sbjct: 266 QVNLEAERLNRDARQRILASGASEIHTLSPQQRADWRQAMQPVWQKFRGNVGADLLQA 323 >BS_ydbE [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Bsu Bacillus subtilis Length = 350 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 2/237 (0%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 +APS +K G L E+ V DLPY F + + G IG LF L+ + GLAYW Sbjct: 105 FIAPSTSKLGMLS-PEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLAYWT 163 Query: 61 NGFKGMSANK-PLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVV 119 NGFK ++ N+ P+ P D +G +RI S V++ Q + LGA P +F+ +Q L+ VV Sbjct: 164 NGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVV 223 Query: 120 DGTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDAT 179 DG EN SN+Y++K + VQ ++T+S HGYLGYAV+ ++ FW + R L AMK+ T Sbjct: 224 DGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETT 283 Query: 180 KYANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLI 236 ++ A+Q N L ++K IY L+DKEK EW K L PV Q G++LI Sbjct: 284 EWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELI 340 >VC1929 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Vch Vibrio cholerae Length = 332 Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 2/238 (0%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 + APSL+KF K++ +FDLP++F + + R G++L + +G+ GL +W Sbjct: 90 LAAPSLSKFEKF-TKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLEFWH 148 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NG K +SANKP+ VPAD +GLK R+Q+S VL AQ +GANPQ ++F+E Y LQT V+D Sbjct: 149 NGMKQISANKPILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVID 208 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 G EN SN+Y QK EVQ T ++HG L Y V+ + K+WDGLPAD+R + + T Sbjct: 209 GQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTI 268 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAA 238 NA + + + + + G + L +++ +W AL PV + IG DLI A Sbjct: 269 ERNAESNKVEELNKQYIIEAG-GVVRTLTPEQRQQWVDALKPVWQKFEKDIGADLIEA 325