BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0116.p         (114 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00558 [K] COG2207 AraC-type DNA-binding domain-containing pro...    97   1e-20
RSp1115 [K] COG2207 AraC-type DNA-binding domain-containing prot...    91   8e-19
VCA1001 [K] COG2207 AraC-type DNA-binding domain-containing prot...    90   1e-18
AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing prot...    89   2e-18
BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing prot...    88   5e-18

>SMc00558 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme
           Sinorhizobium meliloti
          Length = 285

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 63/107 (58%)

Query: 5   VDLHQARPADLQSVRDYLQGHCCDRIALDTLAQLAGVGRYQLIRQFRAQFGMTPHALQLD 64
           V L     + +   RDYL  +    I L+ LA+LAG+ R  LIR FR +F +TPHA   D
Sbjct: 177 VPLQTRESSAVHRARDYLVENYTHDIGLEELAKLAGLSRAHLIRAFRKEFHITPHAFLTD 236

Query: 65  MRINLARDFLRRGASLADVAYRTGFADQSHFHRIFKSRVAATPAQYQ 111
            R+  A+  LRRG S AD AY  GFADQ+HF R FK+R   TP  Y+
Sbjct: 237 KRVREAKALLRRGWSAADTAYHCGFADQAHFSRHFKARTGVTPGAYR 283


>RSp1115 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 270

 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 12  PADLQSVRDYLQGHCCDRIALDTLAQLAGVGRYQLIRQFRAQFGMTPHALQLDMRINLAR 71
           PA  Q VRDY   H  +RI LD LA L  +GR+Q ++QF+   GMTPHA  + +R+  A 
Sbjct: 169 PAQWQRVRDYCFAHAGERITLDDLASLCALGRFQFLKQFKQTVGMTPHAWLVRLRLEQAC 228

Query: 72  DFL-RRGASLADVAYRTGFADQSHFHRIFKSRVAATPAQYQ 111
             L  R  ++A+VA   GF DQSHF+R F+      P+ YQ
Sbjct: 229 SLLSSRSKAIAEVAQEVGFYDQSHFNRAFRQAFGVAPSHYQ 269


>VCA1001 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch
           Vibrio cholerae
          Length = 277

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%)

Query: 18  VRDYLQGHCCDRIALDTLAQLAGVGRYQLIRQFRAQFGMTPHALQLDMRINLARDFLRRG 77
           V+++L       ++L+ LAQLAG+  + L+R F+ QFG+ PHA Q+  R+ LA+  L++G
Sbjct: 182 VKEFLDDFPQADVSLEELAQLAGLSPFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQG 241

Query: 78  ASLADVAYRTGFADQSHFHRIFKSRVAATPAQY 110
            S+++ A   GF DQSH HR FK  +  TP QY
Sbjct: 242 VSISETAQECGFHDQSHLHRHFKKALGITPKQY 274


>AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 285

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 60/96 (62%)

Query: 17  SVRDYLQGHCCDRIALDTLAQLAGVGRYQLIRQFRAQFGMTPHALQLDMRINLARDFLRR 76
           + RDYL  +    I L+ LA +AG+ R  LIR FR +F +TPHA   D+RI  AR  LR 
Sbjct: 189 NARDYLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRA 248

Query: 77  GASLADVAYRTGFADQSHFHRIFKSRVAATPAQYQL 112
           G   A+VA   GFADQ+HF R FK+R   TP Q++L
Sbjct: 249 GEMPAEVAALCGFADQAHFTRHFKARTGVTPGQFRL 284


>BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing proteins Bsu
           Bacillus subtilis
          Length = 275

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 10  ARPAD-LQSVRDYLQGHCCDRIALDTLAQLAGVGRYQLIRQFRAQFGMTPHALQLDMRIN 68
             P+D ++ V ++L+ H  + + L+ L++L G  +Y L+R F  Q G+TP++    +RIN
Sbjct: 164 PEPSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLLRSFTKQKGITPNSYMETIRIN 223

Query: 69  LARDFLRRGASLADVAYRTGFADQSHFHRIFKSRVAATPAQYQLI 113
            A+  L +G    D A++TGF+DQSH  + FK +V  TP QY  I
Sbjct: 224 QAKKLLEQGVRPIDAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKI 268