BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0109.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2868 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 396 e-110 RSc1883 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 336 3e-92 AGpA365 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 322 7e-88 VC0173 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 275 6e-74 SMb21039 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tra... 261 1e-69 >RSc2868 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 304 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/296 (71%), Positives = 256/296 (86%), Gaps = 1/296 (0%) Query: 6 TRKITQADTPFTRFLQGYFASRIATFGFALLLLILLAALFAPLVSPQNPYDLEHLDVMDS 65 T + +TP RF++ + ASR A G +L +I++ AL AP ++PQNPYDL LDV+DS Sbjct: 8 TARPAAEETPLRRFVRQFCASRAAVIGVIVLAIIIVVALAAPWIAPQNPYDLSRLDVLDS 67 Query: 66 RLEPGKTAMEGNLTYVLGTDDQGRDMLSAILYGLRISVMVGVTSTVIALAIGLSLGLLAG 125 RL PG+ + +G + ++LG+DDQGRD+LSAILYGLRISV VG STVIALA+G LGL+AG Sbjct: 68 RLAPGEKSGDG-MIFLLGSDDQGRDILSAILYGLRISVGVGAVSTVIALALGTVLGLIAG 126 Query: 126 YAGGRIEALIMRVADIQLAFPPILVALILLALTGRGIDKIIIALVTVQWAYYARTTRSTA 185 +AGGRIE+LIMR+AD+QL+FPPIL+ALILLAL G+ I+IALV VQWAYYARTTRS A Sbjct: 127 FAGGRIESLIMRIADLQLSFPPILLALILLALLRPGLANIVIALVAVQWAYYARTTRSAA 186 Query: 186 LVERKKEYIEAARLLGLSPLRIMFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGL 245 LVER++EYIEAA++LGL P RIMFRHLLPNCLPPLIVIAALQVASAI+LEATLSFLGLG+ Sbjct: 187 LVERRREYIEAAQVLGLPPSRIMFRHLLPNCLPPLIVIAALQVASAITLEATLSFLGLGV 246 Query: 246 PVTEPSLGLLISNGFQYLMSGKYWISFFPGVALLATVVAINLVADQLRDVLNPRLQ 301 P+TEPSLGLLI+NGFQY++SGKYWISFFPG+ALL T+V++NLV+DQLRDVLNPRLQ Sbjct: 247 PITEPSLGLLIANGFQYMLSGKYWISFFPGLALLLTIVSMNLVSDQLRDVLNPRLQ 302 >RSc1883 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 311 Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/287 (58%), Positives = 221/287 (77%) Query: 13 DTPFTRFLQGYFASRIATFGFALLLLILLAALFAPLVSPQNPYDLEHLDVMDSRLEPGKT 72 +P+ R + S+ A FG A+++L+ AAL AP ++PQNPYDL LDV+D+RL PG Sbjct: 22 QSPWRRVAADFVTSKTAVFGLAVIVLLAAAALAAPWITPQNPYDLMQLDVLDARLAPGSP 81 Query: 73 AMEGNLTYVLGTDDQGRDMLSAILYGLRISVMVGVTSTVIALAIGLSLGLLAGYAGGRIE 132 G TY LGTD QGRD+ S +LYGLRIS+ VG+ S +A IG LGL+A YAGG+++ Sbjct: 82 NGAGTFTYWLGTDGQGRDLYSGMLYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAGGKVD 141 Query: 133 ALIMRVADIQLAFPPILVALILLALTGRGIDKIIIALVTVQWAYYARTTRSTALVERKKE 192 +LIMR D+ L+FP +LVA+++LA G+ I +++ LV ++WAYYART R ALVER++E Sbjct: 142 SLIMRTVDLLLSFPSVLVAMMILAYLGKSIANVVMTLVLLEWAYYARTVRGQALVERRRE 201 Query: 193 YIEAARLLGLSPLRIMFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSL 252 Y+EAAR L L RI RH+LPNCLPPLIV+ LQVA AI+LEATLSFLGLG+P+TEPSL Sbjct: 202 YVEAARSLALPGWRIALRHILPNCLPPLIVVGTLQVARAITLEATLSFLGLGVPITEPSL 261 Query: 253 GLLISNGFQYLMSGKYWISFFPGVALLATVVAINLVADQLRDVLNPR 299 GLLI+NG+QY++SG+YWIS +PG+ALL +VAINLV D+LR+VLNPR Sbjct: 262 GLLIANGYQYMLSGQYWISVYPGLALLLALVAINLVGDRLREVLNPR 308 >AGpA365 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 318 Score = 322 bits (825), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 161/281 (57%), Positives = 216/281 (76%), Gaps = 1/281 (0%) Query: 19 FLQGYFASRIATFGFALLLLILLAALFAPLVSPQNPYDLEHLDVMDSRLEPGKTAMEGNL 78 F++ + S +A G AL+ LI+L A+FAP +SPQNPYDL LD+MD R+ PG + G Sbjct: 35 FMRQFARSPLAVMGLALIFLIVLMAVFAPYLSPQNPYDLMQLDIMDGRMAPGTESSTG-F 93 Query: 79 TYVLGTDDQGRDMLSAILYGLRISVMVGVTSTVIALAIGLSLGLLAGYAGGRIEALIMRV 138 T++ G+DDQGRDMLSAILYGLRIS++VG+ S +A IG + GL A Y GGR+E +MR+ Sbjct: 94 TFLFGSDDQGRDMLSAILYGLRISLIVGLGSAALAFIIGTAFGLTAAYVGGRVETAMMRL 153 Query: 139 ADIQLAFPPILVALILLALTGRGIDKIIIALVTVQWAYYARTTRSTALVERKKEYIEAAR 198 D+QL+FP IL AL++LAL G+ + ++ A+V V+WA YART R AL E ++EY+EAAR Sbjct: 154 VDLQLSFPTILSALLILALLGKSVGNVVFAIVLVEWATYARTARGAALTELRREYVEAAR 213 Query: 199 LLGLSPLRIMFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSLGLLISN 258 L L I+FR LLPNCL PL+V+ +QVA AI+LEATLSFLGLG+PVTEPSLGLLIS+ Sbjct: 214 SLRLPHRNILFRQLLPNCLSPLVVLLTMQVARAITLEATLSFLGLGVPVTEPSLGLLISS 273 Query: 259 GFQYLMSGKYWISFFPGVALLATVVAINLVADQLRDVLNPR 299 G+++++SG YWI+ FPG+ALL T+ AINLV D+LR +++P+ Sbjct: 274 GYEFILSGTYWIALFPGIALLVTIFAINLVGDRLRQLVDPK 314 >VC0173 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Vch Vibrio cholerae Length = 312 Score = 275 bits (704), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 145/305 (47%), Positives = 209/305 (68%), Gaps = 18/305 (5%) Query: 7 RKITQADTPFTRFLQGYFASRIATFGFALLLLILLAALFAPLVSPQNPYDLEHLDVMDSR 66 + Q+D FL + ++A FA+ +L ++ A+ APL++P NPYDL +D+MD+ Sbjct: 12 ERFKQSD-----FLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAE 66 Query: 67 LEPGKTAMEG-NLTYVLGTDDQGRDMLSAILYGLRISVMVGVTSTVIALAIGLSLGLLAG 125 L P + MEG N ++LGTD+QGRD+ S ILYG R+S+ +G + + L +G+ +GL AG Sbjct: 67 LPP--SWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAG 124 Query: 126 YAGGRIEALIMRVADIQLAFPPILVALILLAL-----TGRGIDKIIIALVTV-----QWA 175 Y GGRI++ +MR ADIQL+F ++VA+I+ A+ G + + ++ V +W Sbjct: 125 YFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWP 184 Query: 176 YYARTTRSTALVERKKEYIEAARLLGLSPLRIMFRHLLPNCLPPLIVIAALQVASAISLE 235 YART R++ L E+KKEY+EAAR++G RIMFRH+LPNCL P++VI+ +QVA+AI E Sbjct: 185 QYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSE 244 Query: 236 ATLSFLGLGLPVTEPSLGLLISNGFQYLMSGKYWISFFPGVALLATVVAINLVADQLRDV 295 A LSFLGLGLPV +PSLG LIS GF Y+ SG +WI+ FPG+ L+ V+ INL+ D LRDV Sbjct: 245 AALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDV 304 Query: 296 LNPRL 300 NP++ Sbjct: 305 FNPKI 309 >SMb21039 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 291 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/265 (50%), Positives = 185/265 (69%), Gaps = 1/265 (0%) Query: 35 LLLLILLAALFAPLVSPQNPYDLEHLDVMDSRLEPGKTAMEGNLTYVLGTDDQGRDMLSA 94 LL +L A+ APL++PQNPYD + ++ PG T G Y+LGTD GRD++S Sbjct: 24 LLASYILVAIAAPLIAPQNPYDPLQIYGWEASSPPG-TRGSGGYLYLLGTDGLGRDIVST 82 Query: 95 ILYGLRISVMVGVTSTVIALAIGLSLGLLAGYAGGRIEALIMRVADIQLAFPPILVALIL 154 ILYGLRIS++V + S+ +A IGL+ G+ A Y G ++ IMR+ D+QL+ P IL+ALI Sbjct: 83 ILYGLRISLVVSIVSSALAALIGLTAGVSAAYFGKWVDIAIMRLVDLQLSLPTILIALIA 142 Query: 155 LALTGRGIDKIIIALVTVQWAYYARTTRSTALVERKKEYIEAARLLGLSPLRIMFRHLLP 214 + G GID+II+AL+ QWA YAR R AL E K Y++AARL+ L RI+FRHLLP Sbjct: 143 IVTLGPGIDRIILALIIAQWATYARIARGVALSEANKPYMDAARLMRLPTSRIIFRHLLP 202 Query: 215 NCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSLGLLISNGFQYLMSGKYWISFFP 274 N + P + + ++V A++LEATLSFLGLG+P+ +PSLG ++NGFQYL++G+YWIS FP Sbjct: 203 NSIAPAVTLIPIEVGHAVALEATLSFLGLGVPIDKPSLGSAVANGFQYLLTGQYWISLFP 262 Query: 275 GVALLATVVAINLVADQLRDVLNPR 299 G+AL + +INLV + +R L+PR Sbjct: 263 GLALFGLIASINLVGEDVRRSLDPR 287