BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0102.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    87   8e-18
Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli...    69   3e-12
ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia co...    69   3e-12
mlr5377 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    68   4e-12
SMb20580 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    68   5e-12

>PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 315

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 76/108 (70%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           +P  S I SRLR +Q+ L+ AL+E GSL +AA+ + MTQPAATK LHE E  LGV LF+R
Sbjct: 4   IPDASIIHSRLRLRQLRLMLALEELGSLRRAADEIGMTQPAATKMLHEAEDLLGVELFER 63

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTI 108
             RG+ AT  G  +I Y+R+I +++S +R+EL  + +G  GR+++G I
Sbjct: 64  LPRGMRATPFGETLIYYSRMIFAELSGMREELVALESGNLGRVTVGAI 111


>Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7
           EDL933
          Length = 318

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 4/93 (4%)

Query: 10  RLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIEATE 69
           +L+   + +L AL EQG+L   A +M++TQPA +K L ++E  +G+TLF+R ++G+  TE
Sbjct: 23  KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82

Query: 70  LGRCVIRYARLIQSDISNLRDEL----QGMLTG 98
            G+ ++++A+ + +D+   + EL    QG L G
Sbjct: 83  GGKLLLQHAQRLINDMERSQHELARFKQGGLVG 115


>ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7
          Length = 318

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 61/93 (65%), Gaps = 4/93 (4%)

Query: 10  RLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIEATE 69
           +L+   + +L AL EQG+L   A +M++TQPA +K L ++E  +G+TLF+R ++G+  TE
Sbjct: 23  KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82

Query: 70  LGRCVIRYARLIQSDISNLRDEL----QGMLTG 98
            G+ ++++A+ + +D+   + EL    QG L G
Sbjct: 83  GGKLLLQHAQRLINDMERSQHELARFKQGGLVG 115


>mlr5377 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 301

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 13  FKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIEATELGR 72
            +Q+    A+ EQG++  AA+ + ++Q + T+A+ E+ES LGV LF+R  RG+  T  G 
Sbjct: 5   IRQLQFFIAVAEQGTVSGAAQNLSISQSSVTEAIKELESDLGVELFERHPRGLNITHKGH 64

Query: 73  CVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGT 107
             +R+A  I +D+S+ R    G     GGRL +G 
Sbjct: 65  QFLRHATKILADVSDARRSFSGEQAVAGGRLQLGV 99


>SMb20580 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 313

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%)

Query: 7   IVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIE 66
           I +R++F+ +     +  Q S+ KAAE++H+TQPA TK + E+E  LGV +F+R  RGI+
Sbjct: 2   IDARVKFRHLQTFVEVARQKSVVKAAELLHVTQPAVTKTIRELEEVLGVAVFEREGRGIK 61

Query: 67  ATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTI 108
            T  G   +R+A    + +    D +    +G+G  + +G +
Sbjct: 62  ITRYGEVFLRHAGAALTALRQGLDSVSQERSGEGPPIRVGAL 103