BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0088.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1359 [T] COG0589 Universal stress protein UspA and related nu...   135   4e-32
RSp1159 [T] COG0589 Universal stress protein UspA and related nu...    96   3e-20
BMEII0245 [T] COG0589 Universal stress protein UspA and related ...    90   2e-18
BMEI0102 [T] COG0589 Universal stress protein UspA and related n...    89   3e-18
AGc878 [T] COG0589 Universal stress protein UspA and related nuc...    86   3e-17

>RSc1359 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 168

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 96/145 (66%), Gaps = 1/145 (0%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           MF+ IL+PTDGSE S KA+A A+D+A+   +R+   +  E YP++P +E  +   P  ++
Sbjct: 25  MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVET-PQAFK 83

Query: 61  ENVRTLAEQHVKKIADAALAAGVECETTTILSFAPDEEIVNAAKKYACDVIFMASHGRSG 120
           E V   A   +K + D A AAG++C+T       P   I++AA+++ CDVIFMASHGR G
Sbjct: 84  ERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRG 143

Query: 121 LSRLFLGSKTQKVLAHSTIPVLVLR 145
           L+ L LGS+TQKVL H+ IPV+V R
Sbjct: 144 LAGLLLGSETQKVLTHTAIPVIVYR 168


>RSp1159 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 146

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 1/146 (0%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           MF  IL+PTDGS +  KAI  A+  A     R+   +  E +P    +  +       Y 
Sbjct: 1   MFTHILLPTDGSSQCTKAIDGALKLAHAAGCRLTAYTCIEDFPSMAYSGGAGECPYSHYM 60

Query: 61  ENVRTLAEQHVKKIADAALAAGVECETTTILSFAPDEEIVNAAKKYACDVIFMASHG-RS 119
           E V+  A+  + +IA+ A   GVE ++       P   I++AA+++ACDVIFMASHG RS
Sbjct: 61  EQVQGYAKDCIDRIAERAREEGVEFDSDVTQFAEPYLGILDAARRHACDVIFMASHGHRS 120

Query: 120 GLSRLFLGSKTQKVLAHSTIPVLVLR 145
              RL +G++T+KVL ++ IPV+V R
Sbjct: 121 LTGRLLIGNETRKVLTYAHIPVVVYR 146


>BMEII0245 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 148

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYP--FSPLAESSMAIDP-G 57
           M+K IL+ TDGS  +DK IA  +  A+   +R+  ++VAEP     + +A      DP  
Sbjct: 1   MYKHILIATDGSALADKGIAQGLSLAEQLSARVTVLTVAEPMGGRAAHVAMLGGVRDPVS 60

Query: 58  IYEENVRTLAEQHVKKIADAALAAGVECETTTILSFAPDEEIVNAAKKYACDVIFMASHG 117
           +Y++ +    ++    I   A   G+  E    +  +P + IV  A    CDVI M+SHG
Sbjct: 61  LYDQRIDADMKERFAPIERRASEHGIAFELLHEVDVSPAKAIVRIAHLKQCDVIVMSSHG 120

Query: 118 RSGLSRLFLGSKTQKVLAHSTIPVLVLR 145
             G   L LGS+T+ VL H+TIP+LV+R
Sbjct: 121 HYGFRSLLLGSQTKDVLMHTTIPILVIR 148


>BMEI0102 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 149

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 4/149 (2%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYP-FSPLAESSMAIDPGI- 58
           M+K IL+ TDGSE +DK +   +  A+   + ++ +SV E  P +  +  +  A  P   
Sbjct: 1   MYKRILIATDGSELADKGVKQGVTLAKETGAGVVFVSVTELLPSYGIVVAAEWASSPAAF 60

Query: 59  --YEENVRTLAEQHVKKIADAALAAGVECETTTILSFAPDEEIVNAAKKYACDVIFMASH 116
             Y E +   A   + K    A AAG+  ET  + + +  + IV AAK   CD+I +ASH
Sbjct: 61  QEYREAISKAAADILHKAKAEAEAAGINAETVHVENQSAAQGIVEAAKAKDCDLIVIASH 120

Query: 117 GRSGLSRLFLGSKTQKVLAHSTIPVLVLR 145
           GR G+++L LGS+  +VL+ ST+PVLV++
Sbjct: 121 GRRGVNKLLLGSQAAEVLSLSTVPVLVIK 149


>AGc878 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 160

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 3/146 (2%)

Query: 1   MFKTILVPTDGSERSDKAIANAIDYAQHCKSRIIGISVAEPYPFSPLAESSMAIDPGIYE 60
           MFK IL+PTDGS  +  AI      A+   +++  ++V+EP  F  +A     I     E
Sbjct: 16  MFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTVSEP--FHVIASDVEDIAAIAEE 73

Query: 61  ENVRTLAEQHVKKIADA-ALAAGVECETTTILSFAPDEEIVNAAKKYACDVIFMASHGRS 119
           E  R    +H+ +   A A A G++CE     +  PDE I+  A +  CD+I MASH R 
Sbjct: 74  EFHRCEEAEHLLRDTQAHAAAMGLDCEALLARAGRPDEAIIEIADRTGCDLIAMASHRRR 133

Query: 120 GLSRLFLGSKTQKVLAHSTIPVLVLR 145
               + LGS T KVL +S IPVLV R
Sbjct: 134 SFIEMLLGSVTAKVLKNSKIPVLVYR 159